DR404525

Overview
NameDR404525
Unique NameDR404525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length417
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_STAPU (Photosystem II reaction center protein I OS=Staurastrum punctulatum GN=psbI PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.786e-12
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLF+FGFLSNDP RNPGR+E
Sbjct:    2 LTLKLFVYTVVIFFVSLFVFGFLSNDPTRNPGRKE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_ANTFO (Photosystem II reaction center protein I OS=Anthoceros formosae GN=psbI PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.786e-12
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLF+FGFLSNDP RNPGR+E
Sbjct:    2 LTLKLFVYTVVIFFVSLFVFGFLSNDPKRNPGRKE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_ADICA (Photosystem II reaction center protein I OS=Adiantum capillus-veneris GN=psbI PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.786e-12
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVY VVIFFVSLF+FGFLSNDPGRNPGR++
Sbjct:    2 LTLKLFVYAVVIFFVSLFVFGFLSNDPGRNPGRKD 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_WELMI (Photosystem II reaction center protein I OS=Welwitschia mirabilis GN=psbI PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.499e-11
Identity = 30/35 (85.71%), Postives = 34/35 (97.14%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLK+FVYTVV FF+SLF+FGFLSNDPGRNPGR+E
Sbjct:    2 LTLKVFVYTVVTFFISLFLFGFLSNDPGRNPGRKE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_OEDCA (Photosystem II reaction center protein I OS=Oedogonium cardiacum GN=psbI PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.957e-11
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLK+FVYTVV FFVSLF+FGFLSNDPGRNPG+ E
Sbjct:    2 LTLKIFVYTVVTFFVSLFVFGFLSNDPGRNPGKRE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_CHLVU (Photosystem II reaction center protein I OS=Chlorella vulgaris GN=psbI PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.957e-11
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLK+FVYTVV FFVSLFIFGFLSNDPGRNPG+ E
Sbjct:    2 LTLKIFVYTVVTFFVSLFIFGFLSNDPGRNPGQRE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_NEPOL (Photosystem II reaction center protein I OS=Nephroselmis olivacea GN=psbI PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.695e-11
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLK+FVYTVV FFVSLFIFGFLSNDPGRNPG ++
Sbjct:    2 LTLKIFVYTVVTFFVSLFIFGFLSNDPGRNPGTKD 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_OLTVI (Photosystem II reaction center protein I OS=Oltmannsiellopsis viridis GN=psbI PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.714e-11
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPG 156
            LTLK+FVYTVV FFVSLFIFGFLSNDPGRNPG
Sbjct:    2 LTLKIFVYTVVTFFVSLFIFGFLSNDPGRNPG 33          
The following BLAST results are available for this feature:
BLAST of DR404525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PSBI_STAPU8.786e-1291.43Photosystem II reaction center protein I OS=Staura... [more]
PSBI_ANTFO8.786e-1291.43Photosystem II reaction center protein I OS=Anthoc... [more]
PSBI_ADICA8.786e-1288.57Photosystem II reaction center protein I OS=Adiant... [more]
PSBI_WELMI1.499e-1185.71Photosystem II reaction center protein I OS=Welwit... [more]
PSBI_OEDCA1.957e-1185.71Photosystem II reaction center protein I OS=Oedogo... [more]
PSBI_CHLVU1.957e-1188.57Photosystem II reaction center protein I OS=Chlore... [more]
PSBI_NEPOL5.695e-1185.71Photosystem II reaction center protein I OS=Nephro... [more]
PSBI_OLTVI9.714e-1193.75Photosystem II reaction center protein I OS=Oltman... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243J20 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243J20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404525 ID=DR404525; Name=DR404525; organism=Citrus sinensis; type=EST; length=417bp
GGGGAATCTATTCTCNTTTTTCCTTATTCCCCAAAAACCTGATTTGGANN
NTGTGTAANNCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTCT
TTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAAT
CCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATA
AACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAA
AGTGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACG
GAAAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTA
GCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
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