DR404525 | Citrus Genome Database

Overview


Name	DR404525
Unique Name	DR404525
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	417

Libraries


Library Name	Type
Developing fruit flavedo at 80 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_PANGI (Photosystem II reaction center protein I OS=Panax ginseng GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_OLIPU (Photosystem II reaction center protein I OS=Olimarabidopsis pumila GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_OENPA (Photosystem II reaction center protein I OS=Oenothera parviflora GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_OENGL (Photosystem II reaction center protein I OS=Oenothera glazioviana GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_OENEH (Photosystem II reaction center protein I OS=Oenothera elata subsp. hookeri GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_OENBI (Photosystem II reaction center protein I OS=Oenothera biennis GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_OENAR (Photosystem II reaction center protein I OS=Oenothera argillicola GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_NYMAL (Photosystem II reaction center protein I OS=Nymphaea alba GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_NICTO (Photosystem II reaction center protein I OS=Nicotiana tomentosiformis GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_NICSY (Photosystem II reaction center protein I OS=Nicotiana sylvestris GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

The following BLAST results are available for this feature:

BLAST of DR404525 vs. ExPASy Swiss-Prot

BLAST of DR404525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108


Match Name	E-value	Identity	Description
PSBI_PANGI	2.731e-13	100.00	Photosystem II reaction center protein I OS=Panax ...	[more]
PSBI_OLIPU	2.731e-13	100.00	Photosystem II reaction center protein I OS=Olimar...	[more]
PSBI_OENPA	2.731e-13	100.00	Photosystem II reaction center protein I OS=Oenoth...	[more]
PSBI_OENGL	2.731e-13	100.00	Photosystem II reaction center protein I OS=Oenoth...	[more]
PSBI_OENEH	2.731e-13	100.00	Photosystem II reaction center protein I OS=Oenoth...	[more]
PSBI_OENBI	2.731e-13	100.00	Photosystem II reaction center protein I OS=Oenoth...	[more]
PSBI_OENAR	2.731e-13	100.00	Photosystem II reaction center protein I OS=Oenoth...	[more]
PSBI_NYMAL	2.731e-13	100.00	Photosystem II reaction center protein I OS=Nympha...	[more]
PSBI_NICTO	2.731e-13	100.00	Photosystem II reaction center protein I OS=Nicoti...	[more]
PSBI_NICSY	2.731e-13	100.00	Photosystem II reaction center protein I OS=Nicoti...	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAE-PNP1243J20 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243J20 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR404525 ID=DR404525; Name=DR404525; organism=Citrus sinensis; type=EST; length=417bp
GGGGAATCTATTCTCNTTTTTCCTTATTCCCCAAAAACCTGATTTGGANN
NTGTGTAANNCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTCT
TTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAAT
CCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATA
AACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAA
AGTGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACG
GAAAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTA
GCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA