DR404525 | Citrus Genome Database

Overview


Name	DR404525
Unique Name	DR404525
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	417

Libraries


Library Name	Type
Developing fruit flavedo at 80 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_NASOF (Photosystem II reaction center protein I OS=Nasturtium officinale GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_NANDO (Photosystem II reaction center protein I OS=Nandina domestica GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_MORIN (Photosystem II reaction center protein I OS=Morus indica GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_MANES (Photosystem II reaction center protein I OS=Manihot esculenta GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_MAIZE (Photosystem II reaction center protein I OS=Zea mays GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_LOTJA (Photosystem II reaction center protein I OS=Lotus japonicus GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_LOLPR (Photosystem II reaction center protein I OS=Lolium perenne GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_LOBMA (Photosystem II reaction center protein I OS=Lobularia maritima GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_LIRTU (Photosystem II reaction center protein I OS=Liriodendron tulipifera GN=psbI PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_LEMMI (Photosystem II reaction center protein I OS=Lemna minor GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

The following BLAST results are available for this feature:

BLAST of DR404525 vs. ExPASy Swiss-Prot

BLAST of DR404525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108


Match Name	E-value	Identity	Description
PSBI_NASOF	2.731e-13	100.00	Photosystem II reaction center protein I OS=Nastur...	[more]
PSBI_NANDO	2.731e-13	100.00	Photosystem II reaction center protein I OS=Nandin...	[more]
PSBI_MORIN	2.731e-13	100.00	Photosystem II reaction center protein I OS=Morus ...	[more]
PSBI_MANES	2.731e-13	100.00	Photosystem II reaction center protein I OS=Maniho...	[more]
PSBI_MAIZE	2.731e-13	100.00	Photosystem II reaction center protein I OS=Zea ma...	[more]
PSBI_LOTJA	2.731e-13	100.00	Photosystem II reaction center protein I OS=Lotus ...	[more]
PSBI_LOLPR	2.731e-13	100.00	Photosystem II reaction center protein I OS=Lolium...	[more]
PSBI_LOBMA	2.731e-13	100.00	Photosystem II reaction center protein I OS=Lobula...	[more]
PSBI_LIRTU	2.731e-13	100.00	Photosystem II reaction center protein I OS=Liriod...	[more]
PSBI_LEMMI	2.731e-13	100.00	Photosystem II reaction center protein I OS=Lemna ...	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAE-PNP1243J20 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243J20 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR404525 ID=DR404525; Name=DR404525; organism=Citrus sinensis; type=EST; length=417bp
GGGGAATCTATTCTCNTTTTTCCTTATTCCCCAAAAACCTGATTTGGANN
NTGTGTAANNCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTCT
TTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAAT
CCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATA
AACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAA
AGTGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACG
GAAAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTA
GCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA