DR404525 | Citrus Genome Database

Overview


Name	DR404525
Unique Name	DR404525
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	417

Libraries


Library Name	Type
Developing fruit flavedo at 80 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_AETGR (Photosystem II reaction center protein I OS=Aethionema grandiflora GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_AETCO (Photosystem II reaction center protein I OS=Aethionema cordifolium GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_ACOCL (Photosystem II reaction center protein I OS=Acorus calamus GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_ACOAM (Photosystem II reaction center protein I OS=Acorus americanus GN=psbI PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_SILLA (Photosystem II reaction center protein I OS=Silene latifolia GN=psbI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.084e-13
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRE+
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRED 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_PIPCE (Photosystem II reaction center protein I OS=Piper cenocladum GN=psbI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.084e-13
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRE+
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRED 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSJ (Photosystem II reaction center protein I OS=Oryza sativa subsp. japonica GN=psbI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.084e-13
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSI (Photosystem II reaction center protein I OS=Oryza sativa subsp. indica GN=psbI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.084e-13
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_ORYSA (Photosystem II reaction center protein I OS=Oryza sativa GN=psbI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.084e-13
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36

[Close]

BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_ORYNI (Photosystem II reaction center protein I OS=Oryza nivara GN=psbI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.084e-13
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 1

Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36

The following BLAST results are available for this feature:

BLAST of DR404525 vs. ExPASy Swiss-Prot

BLAST of DR404525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108


Match Name	E-value	Identity	Description
PSBI_AETGR	2.731e-13	100.00	Photosystem II reaction center protein I OS=Aethio...	[more]
PSBI_AETCO	2.731e-13	100.00	Photosystem II reaction center protein I OS=Aethio...	[more]
PSBI_ACOCL	2.731e-13	100.00	Photosystem II reaction center protein I OS=Acorus...	[more]
PSBI_ACOAM	2.731e-13	100.00	Photosystem II reaction center protein I OS=Acorus...	[more]
PSBI_SILLA	6.084e-13	97.14	Photosystem II reaction center protein I OS=Silene...	[more]
PSBI_PIPCE	6.084e-13	97.14	Photosystem II reaction center protein I OS=Piper ...	[more]
PSBI_ORYSJ	6.084e-13	97.14	Photosystem II reaction center protein I OS=Oryza ...	[more]
PSBI_ORYSI	6.084e-13	97.14	Photosystem II reaction center protein I OS=Oryza ...	[more]
PSBI_ORYSA	6.084e-13	97.14	Photosystem II reaction center protein I OS=Oryza ...	[more]
PSBI_ORYNI	6.084e-13	97.14	Photosystem II reaction center protein I OS=Oryza ...	[more]

Pages

Properties


Property Name	Value
Genbank description	CSAE-PNP1243J20 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243J20 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR404525 ID=DR404525; Name=DR404525; organism=Citrus sinensis; type=EST; length=417bp
GGGGAATCTATTCTCNTTTTTCCTTATTCCCCAAAAACCTGATTTGGANN
NTGTGTAANNCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTCT
TTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAAT
CCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATA
AACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAA
AGTGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACG
GAAAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTA
GCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA