DR404525

Overview
NameDR404525
Unique NameDR404525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length417
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_AMBTC (Photosystem II reaction center protein I OS=Amborella trichopoda GN=psbI PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.084e-13
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRDE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_CRYJA (Photosystem II reaction center protein I OS=Cryptomeria japonica GN=psbI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.947e-13
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRKE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_PHYPA (Photosystem II reaction center protein I OS=Physcomitrella patens GN=psbI PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.038e-12
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    2 LTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_MARPO (Photosystem II reaction center protein I OS=Marchantia polymorpha GN=psbI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.038e-12
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    2 LTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_HUPLU (Photosystem II reaction center protein I OS=Huperzia lucidula GN=psbI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.038e-12
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    2 LTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_CHAVU (Photosystem II reaction center protein I OS=Chara vulgaris GN=psbI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.038e-12
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFF+SLFIFGFLSNDPGRNPGR+E
Sbjct:    2 LTLKLFVYTVVIFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_ANGEV (Photosystem II reaction center protein I OS=Angiopteris evecta GN=psbI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.038e-12
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    2 LTLKLFVYTVVIFFVSLFVFGFLSNDPGRNPGRKE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_LEPVR (Photosystem II reaction center protein I OS=Lepidium virginicum GN=psbI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.770e-12
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLF FGFLSNDPGRNPGREE
Sbjct:    2 LTLKLFVYTVVIFFVSLFKFGFLSNDPGRNPGREE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_CYCTA (Photosystem II reaction center protein I OS=Cycas taitungensis GN=psbI PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.312e-12
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1
Query:   64 TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGR+E
Sbjct:    3 TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGRKE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_JASNU (Photosystem II reaction center protein I OS=Jasminum nudiflorum GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.020e-12
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPG+ E
Sbjct:    2 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGQRE 36          
The following BLAST results are available for this feature:
BLAST of DR404525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PSBI_AMBTC6.084e-1397.14Photosystem II reaction center protein I OS=Ambore... [more]
PSBI_CRYJA7.947e-1397.14Photosystem II reaction center protein I OS=Crypto... [more]
PSBI_PHYPA1.038e-1294.29Photosystem II reaction center protein I OS=Physco... [more]
PSBI_MARPO1.038e-1294.29Photosystem II reaction center protein I OS=Marcha... [more]
PSBI_HUPLU1.038e-1294.29Photosystem II reaction center protein I OS=Huperz... [more]
PSBI_CHAVU1.038e-1294.29Photosystem II reaction center protein I OS=Chara ... [more]
PSBI_ANGEV1.038e-1294.29Photosystem II reaction center protein I OS=Angiop... [more]
PSBI_LEPVR1.770e-1297.14Photosystem II reaction center protein I OS=Lepidi... [more]
PSBI_CYCTA2.312e-1297.06Photosystem II reaction center protein I OS=Cycas ... [more]
PSBI_JASNU3.020e-1294.29Photosystem II reaction center protein I OS=Jasmin... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243J20 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243J20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404525 ID=DR404525; Name=DR404525; organism=Citrus sinensis; type=EST; length=417bp
GGGGAATCTATTCTCNTTTTTCCTTATTCCCCAAAAACCTGATTTGGANN
NTGTGTAANNCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTCT
TTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAAT
CCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATA
AACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAA
AGTGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACG
GAAAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTA
GCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
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