DR404525

Overview
NameDR404525
Unique NameDR404525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length417
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_GNEPA (Photosystem II reaction center protein I OS=Gnetum parvifolium GN=psbI PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.020e-12
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLK+FVYTVVIFFVSLF+FGFLSNDPGRNPGR+E
Sbjct:    2 LTLKVFVYTVVIFFVSLFLFGFLSNDPGRNPGRKE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_PSEMZ (Photosystem II reaction center protein I OS=Pseudotsuga menziesii GN=psbI PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.944e-12
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVY VVIFF+SLFIFGFLSNDPGRNPGR+E
Sbjct:    2 LTLKLFVYAVVIFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_PSEJA (Photosystem II reaction center protein I OS=Pseudotsuga japonica GN=psbI PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.944e-12
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVY VVIFF+SLFIFGFLSNDPGRNPGR+E
Sbjct:    2 LTLKLFVYAVVIFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_PINTH (Photosystem II reaction center protein I OS=Pinus thunbergii GN=psbI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.151e-12
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVY VV+FF+SLFIFGFLSNDPGRNPGR+E
Sbjct:    2 LTLKLFVYAVVVFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_PINKO (Photosystem II reaction center protein I OS=Pinus koraiensis GN=psbI PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.151e-12
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVY VV+FF+SLFIFGFLSNDPGRNPGR+E
Sbjct:    2 LTLKLFVYAVVVFFISLFIFGFLSNDPGRNPGRKE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_ZYGCR (Photosystem II reaction center protein I OS=Zygnema circumcarinatum GN=psbI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.727e-12
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTV+IFFVSLF+FGFLSNDP RNPGR+E
Sbjct:    2 LTLKLFVYTVIIFFVSLFVFGFLSNDPSRNPGRKE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_PSINU (Photosystem II reaction center protein I OS=Psilotum nudum GN=psbI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.727e-12
Identity = 31/35 (88.57%), Postives = 34/35 (97.14%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLKLFVYTVVI F+SLF+FGFLSNDPGRNPGR+E
Sbjct:    2 LTLKLFVYTVVILFISLFVFGFLSNDPGRNPGRKE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_CUSRE (Photosystem II reaction center protein I OS=Cuscuta reflexa GN=psbI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.727e-12
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 1
Query:   64 TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            TLKLFVYTVVIFFVSLFIFGFLSNDP RNPGREE
Sbjct:    3 TLKLFVYTVVIFFVSLFIFGFLSNDPRRNPGREE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_CUSEX (Photosystem II reaction center protein I OS=Cuscuta exaltata GN=psbI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.727e-12
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 1
Query:   64 TLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            TLKLFVYTVVIFFVSLFIFGFLSNDP RNPGREE
Sbjct:    3 TLKLFVYTVVIFFVSLFIFGFLSNDPRRNPGREE 36          
BLAST of DR404525 vs. ExPASy Swiss-Prot
Match: PSBI_CHAGL (Photosystem II reaction center protein I OS=Chaetosphaeridium globosum GN=psbI PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.727e-12
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1
Query:   61 LTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 165
            LTLK+FVYTVVIFFVSLFIFGFLSNDP RNPGR+E
Sbjct:    2 LTLKIFVYTVVIFFVSLFIFGFLSNDPARNPGRKE 36          
The following BLAST results are available for this feature:
BLAST of DR404525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PSBI_GNEPA3.020e-1291.43Photosystem II reaction center protein I OS=Gnetum... [more]
PSBI_PSEMZ3.944e-1291.43Photosystem II reaction center protein I OS=Pseudo... [more]
PSBI_PSEJA3.944e-1291.43Photosystem II reaction center protein I OS=Pseudo... [more]
PSBI_PINTH5.151e-1288.57Photosystem II reaction center protein I OS=Pinus ... [more]
PSBI_PINKO5.151e-1288.57Photosystem II reaction center protein I OS=Pinus ... [more]
PSBI_ZYGCR6.727e-1288.57Photosystem II reaction center protein I OS=Zygnem... [more]
PSBI_PSINU6.727e-1288.57Photosystem II reaction center protein I OS=Psilot... [more]
PSBI_CUSRE6.727e-1297.06Photosystem II reaction center protein I OS=Cuscut... [more]
PSBI_CUSEX6.727e-1297.06Photosystem II reaction center protein I OS=Cuscut... [more]
PSBI_CHAGL6.727e-1291.43Photosystem II reaction center protein I OS=Chaeto... [more]

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Properties
Property NameValue
Genbank descriptionCSAE-PNP1243J20 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone CSAE-PNP1243J20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404525 ID=DR404525; Name=DR404525; organism=Citrus sinensis; type=EST; length=417bp
GGGGAATCTATTCTCNTTTTTCCTTATTCCCCAAAAACCTGATTTGGANN
NTGTGTAANNCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATTCT
TTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTAAT
CCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTATA
AACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTAAA
AGTGTTCGCTAAAGTTAAATTTGAAAAATACCAAGCCATCGCCCGAAACG
GAAAGAGAGGGATTCGAACCCTCGGTACGAAGAACTCGTACACCGGATTA
GCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
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