CX070602

Overview
NameCX070602
Unique NameCX070602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_ORITB (50S ribosomal protein L2 OS=Orientia tsutsugamushi (strain Boryong) GN=rplB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.724e-12
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 2
Query:  131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 343
            R L++   G  K+ GRN+ GRITI+HRG G K+L R ID KR    I   VER+EYDPNR+++IA +R+ +G
Sbjct:   28 RPLKKLAKGISKTGGRNNLGRITIWHRGKGHKQLYRMIDFKRRVFDIYATVERIEYDPNRTAFIALIRYDDG 99          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_DINSH (50S ribosomal protein L2 OS=Dinoroseobacter shibae (strain DFL 12) GN=rplB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.724e-12
Identity = 35/74 (47.30%), Postives = 51/74 (68.92%), Query Frame = 2
Query:  131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 349
            R ++  T G  K  GRN++GRIT+  RGGG+KRL R +D KR    + G++ R+EYDPNR+++IA V + +G Q
Sbjct:   28 RPVKSLTEGLSKKGGRNNTGRITMRRRGGGAKRLYRIVDFKRRKFDVEGVITRIEYDPNRTAFIALVTYTDGEQ 101          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_XANP2 (50S ribosomal protein L2 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.252e-12
Identity = 37/82 (45.12%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  101 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 343
            +  + K K V+ L   T GK  S GRN++GRIT+  RGGG K+  R +D KRT   +  +V+R+EYDPNRS++IA +++ +G
Sbjct:   21 RSGLYKGKPVKTL---TEGKSSSGGRNNNGRITVRFRGGGHKQTYRLVDFKRTKRGVPAVVDRIEYDPNRSAFIALIKYEDG 99          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_WOLTR (50S ribosomal protein L2 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=rplB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.252e-12
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 2
Query:  140 RQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRW 334
            +    GK  S GRN++GRITI H+GGG K+  R ID KR  +  G+VE++EYDPNRS ++A V +
Sbjct:   31 KSLAFGKKSSGGRNNNGRITIRHKGGGHKKKYRIIDFKRNRNDQGVVEKIEYDPNRSGFLALVSY 95          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_RICBR (50S ribosomal protein L2 OS=Rickettsia bellii (strain RML369-C) GN=rplB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.252e-12
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 2
Query:  131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 343
            R  +  T G  K+ GRN+ GRIT + RGGG KRL R ID KR    I  IVER+EYDPNR+++IA +++ +G
Sbjct:   28 RPFKALTKGISKTGGRNNQGRITSWQRGGGHKRLYRVIDFKRNKLDISAIVERIEYDPNRTAFIALIKYEDG 99          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_RICB8 (50S ribosomal protein L2 OS=Rickettsia bellii (strain OSU 85-389) GN=rplB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.252e-12
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 2
Query:  131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 343
            R  +  T G  K+ GRN+ GRIT + RGGG KRL R ID KR    I  IVER+EYDPNR+++IA +++ +G
Sbjct:   28 RPFKALTKGISKTGGRNNQGRITSWQRGGGHKRLYRVIDFKRNKLDISAIVERIEYDPNRTAFIALIKYEDG 99          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_PARDP (50S ribosomal protein L2 OS=Paracoccus denitrificans (strain Pd 1222) GN=rplB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.252e-12
Identity = 35/74 (47.30%), Postives = 53/74 (71.62%), Query Frame = 2
Query:  131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 349
            R ++  T G  K+ GRN++GRIT+  +GGG+KRL R +D KRT   +   VER+EYDPNR+++IA +++ +G Q
Sbjct:   28 RPVKSLTEGLTKNGGRNNTGRITMRRKGGGAKRLYRIVDFKRTKFDVSATVERIEYDPNRTAFIALIKYEDGEQ 101          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_SILST (50S ribosomal protein L2 OS=Silicibacter sp. (strain TM1040) GN=rplB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 2
Query:  131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 349
            R ++  T G  KS GRN++GRIT   RGGG+KRL R +D KR    +   VER+EYDPNR+++IA V++ +G Q
Sbjct:   28 RPVKSLTEGLTKSGGRNNTGRITSRRRGGGAKRLYRIVDFKRNKFDVAATVERIEYDPNRTAFIALVKYEDGEQ 101          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_SILPO (50S ribosomal protein L2 OS=Silicibacter pomeroyi GN=rplB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.842e-12
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 2
Query:  131 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 349
            R ++  T G  KS GRN++GRIT   RGGG+KRL R +D KR    +   VER+EYDPNR+++IA +++ +G Q
Sbjct:   28 RPVKSLTEGLTKSGGRNNTGRITSRRRGGGAKRLYRIVDFKRNKFDVAATVERIEYDPNRTAFIALIKYEDGEQ 101          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_NITWN (50S ribosomal protein L2 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.842e-12
Identity = 38/87 (43.68%), Postives = 58/87 (66.67%), Query Frame = 2
Query:   92 MGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 349
            M  + A+ K K V+ L +   GKG   GRN++GRIT+  RGGG K+  R +D KR  + +  +VER+EYDPNR+++IA +++ +G Q
Sbjct:   18 MVDRSALYKGKPVKTLTEGKRGKG---GRNNTGRITVRFRGGGHKQAYRNVDFKRGKTDVPAVVERLEYDPNRTAFIALIKYQDGEQ 101          
The following BLAST results are available for this feature:
BLAST of CX070602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
RL2_ORITB1.724e-1251.3950S ribosomal protein L2 OS=Orientia tsutsugamushi... [more]
RL2_DINSH1.724e-1247.3050S ribosomal protein L2 OS=Dinoroseobacter shibae... [more]
RL2_XANP22.252e-1245.1250S ribosomal protein L2 OS=Xanthobacter autotroph... [more]
RL2_WOLTR2.252e-1250.7750S ribosomal protein L2 OS=Wolbachia sp. subsp. B... [more]
RL2_RICBR2.252e-1251.3950S ribosomal protein L2 OS=Rickettsia bellii (str... [more]
RL2_RICB82.252e-1251.3950S ribosomal protein L2 OS=Rickettsia bellii (str... [more]
RL2_PARDP2.252e-1247.3050S ribosomal protein L2 OS=Paracoccus denitrifica... [more]
RL2_SILST2.941e-1250.0050S ribosomal protein L2 OS=Silicibacter sp. (stra... [more]
RL2_SILPO3.842e-1248.6550S ribosomal protein L2 OS=Silicibacter pomeroyi ... [more]
RL2_NITWN3.842e-1243.6850S ribosomal protein L2 OS=Nitrobacter winogradsk... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17G11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17G11-M21-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070602 ID=CX070602; Name=CX070602; organism=Citrus sinensis; type=EST; length=748bp
CTAGACACCCTTTTTTCACTCGGTCACCGCCGAATCCGCGGCAGCCATTC
AGAGTATCTCCGGAGTAGGGGCTAATTTGTAAGGGAATCGAATGGGTACG
AAACAGGCAATGACAAAATTTAAAGAGGTGAGAGCACTGAGACAATTCAC
TTTGGGTAAAGGGAAGTCCGCTGGTAGGAACTCCTCGGGGCGTATTACGA
TTTTTCACCGGGGGGGTGGTTCGAAGCGATTGCAGCGAAGAATTGATCTG
AAACGTACCACTTCCTCTATTGGTATTGTTGAAAGGGTTGAATATGACCC
TAATCGTTCCTCTTGGATCGCTCCTGTACGATGGATCGAAGGGGTTCAGA
TGCAGCAGAAGAAGTGCAACACCATAGAAGAGTTTGATCCGCCGCCGCTA
CGTAAGTTCTTCGAACCTACCACCGCCGCCATCAGCGGCAAATTTTCGTT
CTCTTTCCTCTCCCAGAATGTGGATCAAAGAAAGGTAGCTTCCTTCTCAC
CTGGACTGATGGCGGCTGATGTAAATGCCATGGTTAGCATTCCTAGTTCG
AAGAGCCCCTTTACGACTACTAGTGATAGCAAGGGTGCAGGAGGAAAAAG
TAAAATAACTTGCGCAAAGGATGTCTTCTTTTCTGCATTCTCATCTCCAA
TGGCCAGTGGAGAGACTGCCTCCCTTTCCTACCCTAGGATGGCAGTAGCT
GGAGCGAAGCCCACTTTCTTCGCCCCTCGAATGGTAGAGAAAGTCGGA
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