CX070602

Overview
NameCX070602
Unique NameCX070602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_AZOC5 (50S ribosomal protein L2 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.247e-11
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 2
Query:  101 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 343
            +  + K K V+ L   T GK  S GRN++GRIT+  RGGG K+  R +D KR    +   VER+EYDPNR+++IA +++ +G
Sbjct:   21 RSGLYKGKPVKTL---TEGKSSSGGRNNNGRITVRFRGGGHKQTYRLVDFKRAKRDVSATVERLEYDPNRTAFIALIKYEDG 99          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_PARL1 (50S ribosomal protein L2 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.547e-11
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 2
Query:  101 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 343
            + A+ K K V+ L   T G  KS GRN+ GRIT+  RGGG KR  R +D KR    +   VER+EYDPNR+++IA V++ +G
Sbjct:   21 RSALYKGKPVKDL---TEGLTKSGGRNNHGRITVRFRGGGHKRSYRTVDFKRRRYDVPATVERLEYDPNRTAFIALVKYEDG 99          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_BRASO (50S ribosomal protein L2 OS=Bradyrhizobium sp. (strain ORS278) GN=rplB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.547e-11
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 2
Query:   92 MGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 343
            M  + A+ K K V+AL   T GK  S GRN++GRIT+   GGG K+  R +D KR    +   VER+EYDPNR+++IA V++ +G
Sbjct:   18 MVDRSALYKGKPVKAL---TEGKQSSGGRNNTGRITVRFLGGGHKQSYRTVDFKRDKVDVPATVERLEYDPNRTAFIALVKYQDG 99          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_RHIEC (50S ribosomal protein L2 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.245e-11
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  101 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 349
            + ++ K K V+AL   T G  KS GRN+ GRIT    GGG KR  R +D KR    I G VER+EYDPNR+++IA V + +G Q
Sbjct:   21 RSSLYKGKPVKAL---TEGLTKSGGRNNLGRITARFIGGGHKRSYRLVDFKRRKFDIEGTVERIEYDPNRTAFIALVTYSDGEQ 101          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_RHIE6 (50S ribosomal protein L2 OS=Rhizobium etli (strain CIAT 652) GN=rplB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.245e-11
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 2
Query:  101 KQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEGVQ 349
            + ++ K K V+AL   T G  KS GRN+ GRIT    GGG KR  R +D KR    + G VER+EYDPNR+++IA V + +G Q
Sbjct:   21 RSSLYKGKPVKAL---TEGLTKSGGRNNLGRITARFIGGGHKRSYRLVDFKRRKFDVEGTVERIEYDPNRTAFIALVSYADGEQ 101          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_MARAV (50S ribosomal protein L2 OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=rplB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.245e-11
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  158 KGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 343
            K KS GRN+ GRIT  H GGG K+  R ID KRT   I  ++ER+EYDPNRS+ IA V++ +G
Sbjct:   37 KSKSGGRNNVGRITTRHIGGGHKQHYRVIDFKRTKDGIPAVIERLEYDPNRSAHIALVKYADG 99          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_FINM2 (50S ribosomal protein L2 OS=Finegoldia magna (strain ATCC 29328) GN=rplB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.245e-11
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 2
Query:  140 RQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 343
            +  T+   KS GRNS GR+TI HRGGG+KR  R ID KR    I  +V+ +EYDPNR++ IA +++ +G
Sbjct:   31 KSLTVSLNKSGGRNSYGRVTIRHRGGGAKRKYRIIDFKRNKDGIKAVVKSIEYDPNRTANIALLQYEDG 99          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_ACICJ (50S ribosomal protein L2 OS=Acidiphilium cryptum (strain JF-5) GN=rplB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.245e-11
Identity = 41/101 (40.59%), Postives = 59/101 (58.42%), Query Frame = 2
Query:   44 AIQSISGVGANL*GNRMGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 343
            A++    V A+L G  +  +  + K K V+ L   T G   S GRN+ GR T+  RGGG KR  R +D KR    +   VER+EYDPNRS+++A V++ +G
Sbjct:    2 ALKHFKPVTASLRGTVLVDRSELWKGKPVKGL---TEGLTSSGGRNNHGRTTVRFRGGGHKRAYRVVDFKRRKFDVAATVERLEYDPNRSAFLALVKYEDG 99          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RK2_CHAVU (50S ribosomal protein L2, chloroplastic OS=Chara vulgaris GN=rpl2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.245e-11
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 2
Query:   95 GTK-QAMTKFKEVRALR---QFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 343
            GT+ ++++ +K +  L+     T GK    GRN+ G IT  HRGGG KRL R+ID +R    I GIV+ +EYDPNR+S I  V + +G
Sbjct:   12 GTRNRSVSDYKNISCLKPEKSLTSGKMSKKGRNNQGIITSRHRGGGHKRLYRKIDFRRKKIGIYGIVKTIEYDPNRNSHICLVNYEDG 99          
BLAST of CX070602 vs. ExPASy Swiss-Prot
Match: RL2_SYNFM (50S ribosomal protein L2 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.462e-11
Identity = 37/88 (42.05%), Postives = 49/88 (55.68%), Query Frame = 2
Query:   83 GNRMGTKQAMTKFKEVRALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 343
            G R  T     +   V   +       +S GRN+SGR+T +HRGGG KR  R ID KR   +I   V  +EYDPNRSS IA +++ +G
Sbjct:   12 GRRFQTYATFEELSNVEPEKSLLEPLRRSGGRNASGRVTSWHRGGGHKRRYRIIDFKRNKENIPATVASIEYDPNRSSHIALLKYADG 99          
The following BLAST results are available for this feature:
BLAST of CX070602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
RL2_AZOC54.247e-1143.9050S ribosomal protein L2 OS=Azorhizobium caulinoda... [more]
RL2_PARL15.547e-1147.5650S ribosomal protein L2 OS=Parvibaculum lavamenti... [more]
RL2_BRASO5.547e-1145.8850S ribosomal protein L2 OS=Bradyrhizobium sp. (st... [more]
RL2_RHIEC7.245e-1148.8150S ribosomal protein L2 OS=Rhizobium etli (strain... [more]
RL2_RHIE67.245e-1147.6250S ribosomal protein L2 OS=Rhizobium etli (strain... [more]
RL2_MARAV7.245e-1155.5650S ribosomal protein L2 OS=Marinobacter aquaeolei... [more]
RL2_FINM27.245e-1149.2850S ribosomal protein L2 OS=Finegoldia magna (stra... [more]
RL2_ACICJ7.245e-1140.5950S ribosomal protein L2 OS=Acidiphilium cryptum (... [more]
RK2_CHAVU7.245e-1144.3250S ribosomal protein L2, chloroplastic OS=Chara v... [more]
RL2_SYNFM9.462e-1142.0550S ribosomal protein L2 OS=Syntrophobacter fumaro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17G11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17G11-M21-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070602 ID=CX070602; Name=CX070602; organism=Citrus sinensis; type=EST; length=748bp
CTAGACACCCTTTTTTCACTCGGTCACCGCCGAATCCGCGGCAGCCATTC
AGAGTATCTCCGGAGTAGGGGCTAATTTGTAAGGGAATCGAATGGGTACG
AAACAGGCAATGACAAAATTTAAAGAGGTGAGAGCACTGAGACAATTCAC
TTTGGGTAAAGGGAAGTCCGCTGGTAGGAACTCCTCGGGGCGTATTACGA
TTTTTCACCGGGGGGGTGGTTCGAAGCGATTGCAGCGAAGAATTGATCTG
AAACGTACCACTTCCTCTATTGGTATTGTTGAAAGGGTTGAATATGACCC
TAATCGTTCCTCTTGGATCGCTCCTGTACGATGGATCGAAGGGGTTCAGA
TGCAGCAGAAGAAGTGCAACACCATAGAAGAGTTTGATCCGCCGCCGCTA
CGTAAGTTCTTCGAACCTACCACCGCCGCCATCAGCGGCAAATTTTCGTT
CTCTTTCCTCTCCCAGAATGTGGATCAAAGAAAGGTAGCTTCCTTCTCAC
CTGGACTGATGGCGGCTGATGTAAATGCCATGGTTAGCATTCCTAGTTCG
AAGAGCCCCTTTACGACTACTAGTGATAGCAAGGGTGCAGGAGGAAAAAG
TAAAATAACTTGCGCAAAGGATGTCTTCTTTTCTGCATTCTCATCTCCAA
TGGCCAGTGGAGAGACTGCCTCCCTTTCCTACCCTAGGATGGCAGTAGCT
GGAGCGAAGCCCACTTTCTTCGCCCCTCGAATGGTAGAGAAAGTCGGA
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