CX070587

Overview
NameCX070587
Unique NameCX070587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070587 vs. ExPASy Swiss-Prot
Match: ATL2N_ARATH (RING-H2 finger protein ATL2N OS=Arabidopsis thaliana GN=ATL2N PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.512e-11
Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 1
Query:  376 KGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCR 591
            + L + ++ K+P     S+     + +  CS+CL +FEE D  R LP CGH FH +C+D W     +CP+CR
Sbjct:   79 QALDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCR 150          
BLAST of CX070587 vs. ExPASy Swiss-Prot
Match: ATL5N_ARATH (Putative RING-H2 finger protein ATL5N OS=Arabidopsis thaliana GN=ATL5N PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = 1
Query:  382 LSEDMIQKLPECALHSEELIQLDNEIG-CSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRE 594
            + +  I  LP   LH + +I L +++  C++CL +F   D  R LP C H FH EC+D WL  N +CP+CR+
Sbjct:   96 IDQSFIDALP--LLHYKTMIGLRHDLSDCAVCLREFTAEDELRLLPKCSHAFHVECIDTWLLTNSTCPLCRD 165          
BLAST of CX070587 vs. ExPASy Swiss-Prot
Match: ATL1A_ARATH (RING-H2 finger protein ATL1A OS=Arabidopsis thaliana GN=ATL1A PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.892e-11
Identity = 29/80 (36.25%), Postives = 45/80 (56.25%), Query Frame = 1
Query:  376 KGLSEDMIQKLPECALHSEELI-----QLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 600
            +GL E  I+ +P       +++     Q  N   CS+CL +F+E +  R +P+C H FH +C+D WL  N +CP+CR  V
Sbjct:  100 RGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSV 179          
BLAST of CX070587 vs. ExPASy Swiss-Prot
Match: ATL3F_ARATH (RING-H2 finger protein ATL3F OS=Arabidopsis thaliana GN=ATL3F PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.696e-11
Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = 1
Query:  364 VTGVKGLSEDMIQKLPECALHSEELIQLDNEIGCSICLEKFEEGDSARKLPSCGHCFHSECVDKWLTRNGSCPVCRECV 600
            V   +GL  ++I+ LP      E      + I C++CL +FEE ++ R LP+C H FH +C+D W   + +CP+CR  V
Sbjct:   89 VVASRGLDPNVIKSLPVFTFSDETH---KDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHSTCPLCRSLV 164          
The following BLAST results are available for this feature:
BLAST of CX070587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ATL2N_ARATH4.512e-1137.50RING-H2 finger protein ATL2N OS=Arabidopsis thalia... [more]
ATL5N_ARATH5.892e-1140.28Putative RING-H2 finger protein ATL5N OS=Arabidops... [more]
ATL1A_ARATH5.892e-1136.25RING-H2 finger protein ATL1A OS=Arabidopsis thalia... [more]
ATL3F_ARATH7.696e-1136.71RING-H2 finger protein ATL3F OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17G01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17G01-M1-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070587 ID=CX070587; Name=CX070587; organism=Citrus sinensis; type=EST; length=779bp
TGTGCGTTTGGGACTGGAGTTTTGATTAGAGCGATGAAAAGAGTTCTTTA
TGCAGCACTCACCTGCATTTTTGCCTTAGGAGGGGCAATTGTTGGAACAA
TATTTGGAGCCATGAAAGGCCAAACAACAGAAACTGGGTTCCTTCACGGG
GCTGGAATAGGCGCTGTGGCCGGCGCCATCACAGCCCTTCAATTGCTAGA
ATCAGCAGCTGATGGCGAGTCGTTGTCCAAGGCGGCATTGTTAAGTAGCT
TAGTAAACGGCAAGGTTTTCATGGAATGGGTAAGTCCTGCAGTGCTGAAA
GCCTATCAGTGGCAAGTTAGCACATTAGAAACTGCTTACAGAGAAGTTTC
TGATGTATACGATGTGACTGGAGTTAAAGGGTTATCCGAAGATATGATTC
AAAAGCTTCCTGAATGCGCACTCCATTCTGAAGAACTGATCCAATTAGAC
AATGAAATTGGCTGTTCAATTTGCTTAGAGAAATTTGAGGAAGGAGATTC
CGCAAGAAAACTTCCCAGTTGCGGGCACTGCTTTCATTCGGAATGCGTAG
ATAAATGGCTAACCAGAAATGGCTCTTGCCCTGTGTGTAGAGAATGTGTA
TGTAAAGATACTGACACATGGTAATGTAGACCGGTGAATTCACTGATCTT
ATCAATGGAATTCCAAATTCCAAAGTGTAATTACTTTTTGCTTTCATTTT
CATGAAGAAGACATTAATGGTGTGTGGCCTCGTTGTGATTTGTTGACGTT
AAGTGGCATTTATAAAAAAAAAAAAAAAA
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