CX070583

Overview
NameCX070583
Unique NameCX070583
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX070583 vs. ExPASy Swiss-Prot
Match: RS8_METTL (30S ribosomal protein S8P OS=Methanococcus thermolithotrophicus GN=rps8p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.625e-25
Identity = 53/124 (42.74%), Postives = 84/124 (67.74%), Query Frame = 1 
Query:   79 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 450
            L +AL  + N E  GK    ++P+SK+I + L VMQ HGYIG FEY++D RAG   VEL G++NKCG + PR+ V  +E E +  R LP++ FG ++++T  G+M H+EA+ + +GG+++ + +
Sbjct:    7 LANALNHISNCEGVGKSVAYVKPASKLIGRVLNVMQDHGYIGNFEYIEDGRAGIYKVELIGQINKCGAVKPRYAVKKQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKNQGLGGRLISYVF 130
[Close]
BLAST of CX070583 vs. ExPASy Swiss-Prot
Match: RS8_HALWD (30S ribosomal protein S8P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps8p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.123e-25
Identity = 55/124 (44.35%), Postives = 77/124 (62.10%), Query Frame = 1 
Query:   79 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 450
            L +AL  + NAE  G     I+P+S VI   L V    GYI  FE+VDD +AG+  VEL+G +N+CG + PR+  G  E E W  R LP+R +G +++TTS G+M H EAR   +GG+V+ + Y
Sbjct:    7 LANALSGVDNAESVGHLSHEIQPASNVIGSVLEVFYDRGYINGFEFVDDGKAGRFEVELSGGINECGAVKPRYSAGADEFERWEKRYLPARDYGALIVTTSHGVMSHYEARETGIGGQVIAYVY 130
[Close]
BLAST of CX070583 vs. ExPASy Swiss-Prot
Match: RS8_METVS (30S ribosomal protein S8P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps8p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.729e-25
Identity = 53/124 (42.74%), Postives = 82/124 (66.13%), Query Frame = 1 
Query:   79 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 450
            L +AL  + N E  GK    ++P+SK+I + L VMQ  GYIG FEY++D +AG   V+L G++NKCG + PR+ V  +E E +  R LP++ FG ++++T  G+M H+EAR   VGG+++ + Y
Sbjct:    7 LANALNHVSNCEGVGKNVAYLKPASKLIGRVLKVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKYQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARTAGVGGRLISYVY 130
[Close]
BLAST of CX070583 vs. ExPASy Swiss-Prot
Match: RS8_METVA (30S ribosomal protein S8P OS=Methanococcus vannielii GN=rps8p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.729e-25
Identity = 53/124 (42.74%), Postives = 82/124 (66.13%), Query Frame = 1 
Query:   79 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 450
            L +AL  + N E  GK    ++P+SK+I + L VMQ  GYIG FEY++D +AG   V+L G++NKCG + PR+ V  +E E +  R LP++ FG ++++T  G+M H+EAR   VGG+++ + Y
Sbjct:    7 LANALNHVSNCEGVGKNVAYLKPASKLIGRVLKVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKYQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARTAGVGGRLISYVY 130
[Close]
BLAST of CX070583 vs. ExPASy Swiss-Prot
Match: RS8_NATPD (30S ribosomal protein S8P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps8p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.176e-25
Identity = 52/124 (41.94%), Postives = 76/124 (61.29%), Query Frame = 1 
Query:   79 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 450
            L  AL  + NAE  G  +  I+P+S  I   L V    GY+  F++VDD +AG+  VEL G +N+CG + PR+  G  E E W  R LP+R +G +++TTS G+M H EAR + +GG+V+ + Y
Sbjct:    7 LASALSGLDNAESVGHLEQTIQPASNEIGSVLEVFYDRGYVDGFQFVDDGKAGRFEVELKGAINECGAVKPRYSAGADEFEKWEKRFLPARDYGTLIVTTSHGVMSHYEAREQGIGGQVIAYVY 130
[Close]
BLAST of CX070583 vs. ExPASy Swiss-Prot
Match: RS8_METM7 (30S ribosomal protein S8P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps8p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.176e-25
Identity = 53/124 (42.74%), Postives = 81/124 (65.32%), Query Frame = 1 
Query:   79 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 450
            L +AL  + N E  GK    ++P+SK+I + L VMQ  GYIG FEY++D +AG   V+L G++NKCG + PRF V   + E +  R LP++ FG ++++T  G+M H+EAR   VGG+++ + Y
Sbjct:    7 LANALNHVSNCESVGKNVAYLKPASKLIGRVLNVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRFAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARNAGVGGRLISYIY 130
[Close]
BLAST of CX070583 vs. ExPASy Swiss-Prot
Match: RS8_METVO (30S ribosomal protein S8P OS=Methanococcus voltae GN=rps8p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.066e-25
Identity = 52/124 (41.94%), Postives = 81/124 (65.32%), Query Frame = 1 
Query:   79 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 450
            L +AL  + N E  GK    ++P+SK+I + L VMQ  GYIG FEY++D +AG   V L G++NKCG + PRF V  +E E +  R LP++ FG ++++T  G+M H+EA+   +GG+++ + Y
Sbjct:    7 LANALNHISNCENVGKNTAYLKPASKLIGRVLKVMQDQGYIGNFEYIEDGKAGVYKVTLIGQINKCGAVKPRFAVKNQEFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEAKDSGIGGRLISYIY 130
[Close]
BLAST of CX070583 vs. ExPASy Swiss-Prot
Match: RS8_METM6 (30S ribosomal protein S8P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps8p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.066e-25
Identity = 53/124 (42.74%), Postives = 81/124 (65.32%), Query Frame = 1 
Query:   79 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 450
            L +AL  + N E  GK    ++P+SK+I + L VMQ  GYIG FEY++D +AG   V+L G++NKCG + PRF V   + E +  R LP++ FG ++++T  G+M H+EAR   VGG+++ + Y
Sbjct:    7 LANALNHVSNCESVGKNVAYLKPASKLIGRVLNVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRFAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARSAGVGGRLISYIY 130
[Close]
BLAST of CX070583 vs. ExPASy Swiss-Prot
Match: RS8_METST (30S ribosomal protein S8P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps8p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.053e-24
Identity = 57/124 (45.97%), Postives = 78/124 (62.90%), Query Frame = 1 
Query:   79 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 450
            L DAL ++ N E +G    +I+P+SK+I   L  MQK  YIG FE VDD +AG   VEL G +NKCGVI PR  V   E E +  R LP++ FG +++TT  G+M H EA+   +GG++L + Y
Sbjct:    7 LADALTNIRNNELQGNDSCVIKPASKLIGHVLSTMQKENYIGNFELVDDGKAGIFNVELVGNINKCGVIKPRHAVKNTEFEDYEKRYLPAKNFGILIVTTPQGVMTHHEAKEAGIGGRLLVYVY 130
[Close]
BLAST of CX070583 vs. ExPASy Swiss-Prot
Match: RS8_METMP (30S ribosomal protein S8P OS=Methanococcus maripaludis GN=rps8p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.376e-24
Identity = 52/124 (41.94%), Postives = 81/124 (65.32%), Query Frame = 1 
Query:   79 LNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 450
            L +AL  + N E  GK    ++P+SK+I + L VMQ  GYIG FEY++D +AG   V+L G++NKCG + PR+ V   + E +  R LP++ FG ++++T  G+M H+EAR   VGG+++ + Y
Sbjct:    7 LANALNHVSNCESVGKNVAYLKPASKLIGRVLNVMQDQGYIGNFEYIEDGKAGVYKVDLIGQINKCGAVKPRYAVKNHDFEKFEKRYLPAKGFGLLIVSTPKGLMTHDEARNAGVGGRLISYIY 130
The following BLAST results are available for this feature:
BLAST of CX070583 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
RS8_METTL1.625e-2542.7430S ribosomal protein S8P OS=Methanococcus thermol... [more]
RS8_HALWD2.123e-2544.3530S ribosomal protein S8P OS=Haloquadratum walsbyi... [more]
RS8_METVS4.729e-2542.7430S ribosomal protein S8P OS=Methanococcus vanniel... [more]
RS8_METVA4.729e-2542.7430S ribosomal protein S8P OS=Methanococcus vanniel... [more]
RS8_NATPD6.176e-2541.9430S ribosomal protein S8P OS=Natronomonas pharaoni... [more]
RS8_METM76.176e-2542.7430S ribosomal protein S8P OS=Methanococcus maripal... [more]
RS8_METVO8.066e-2541.9430S ribosomal protein S8P OS=Methanococcus voltae ... [more]
RS8_METM68.066e-2542.7430S ribosomal protein S8P OS=Methanococcus maripal... [more]
RS8_METST1.053e-2445.9730S ribosomal protein S8P OS=Methanosphaera stadtm... [more]
RS8_METMP1.376e-2441.9430S ribosomal protein S8P OS=Methanococcus maripal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_17F11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17F11-K21-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070583 ID=CX070583; Name=CX070583; organism=Citrus sinensis; type=EST; length=708bp
TTTGCAGCTCACGTACTCTTTCAGAGGCGCCTCTCCCTGCTTTGATTTGC
CTACGCAACAATGGTGAGAGTTAGTGTTCTGAATGACGCTCTTAAGAGCA
TGTATAATGCCGAGAAAAGGGGGAAGCGTCAGGTTATGATCAGACCATCC
TCCAAGGTTATCATTAAGTTTCTTCTGGTGATGCAAAAGCACGGGTACAT
TGGTGAGTTTGAGTATGTTGATGACCACAGAGCTGGTAAGATTGTGGTTG
AACTGAACGGAAGATTGAACAAATGTGGGGTTATCAGTCCCCGTTTTGAT
GTTGGCGTCAAGGAGATTGAAGGTTGGACTGCTAGGTTGCTTCCCTCAAG
ACAGTTTGGATACATTGTGCTGACAACTTCTGCTGGCATTATGGACCACG
AAGAGGCGAGAAGGAAGAATGTTGGTGGTAAAGTGCTTGGTTTTTTCTAC
TAGGCAAAGTTCATATTGAGAATGGGACTTGAGTTTTGTTTGTGTACTTT
GGAAGAACTTGTTCACAAATGGATTAGCTTCTCTTTGTTTTACTTGATTT
AATTATGCATTTTTAAACTCGGATTGGTACCTTTTAGTTGAAGAAAGATG
ATATTATGTGTTACACACATTTATCTCTTAGCAGTTGATTTGGTGATCAA
TTTTCCCAAGTTCTGTTAACATCTGATTGTGTAAGTGAGGAATATAAGTT
TTATTCCT
back to top