CX070578 | Citrus Genome Database

Overview


Name	CX070578
Unique Name	CX070578
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	683

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2_BARVE (50S ribosomal protein L2, chloroplastic OS=Barbarea verna GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 3

Query:  528 TDMPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            TDMPLGTAIHNIEITLGKGGQL RAAGAVAKLIAKEGKSATL LP
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP 175

[Close]

BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2_ARAHI (50S ribosomal protein L2, chloroplastic OS=Arabis hirsuta GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 3

Query:  528 TDMPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            TDMPLGTAIHNIEITLGKGGQL RAAGAVAKLIAKEGKSATL LP
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP 175

[Close]

BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2_AMBTC (50S ribosomal protein L2, chloroplastic OS=Amborella trichopoda GN=rpl2-A PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 3

Query:  528 TDMPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            TDMPLGTAIHNIEITLGKGGQL RAAGAVAKLIAKEGKSATL LP
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLP 175

[Close]

BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2_ACOCL (50S ribosomal protein L2, chloroplastic OS=Acorus calamus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 3

Query:  528 TDMPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            TDMPLGTAIHNIEITLGKGGQL RAAGAVAKLIAKEGKSATL LP
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLP 175

[Close]

BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2_ACOAM (50S ribosomal protein L2, chloroplastic OS=Acorus americanus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 3

Query:  528 TDMPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            TDMPLGTAIHNIEITLGKGGQL RAAGAVAKLIAKEGKSATL LP
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLP 175

[Close]

BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2B_LIRTU (50S ribosomal protein L2-B, chloroplastic OS=Liriodendron tulipifera GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 3

Query:  528 TDMPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            TDMPLGTAIHNIEITLGKGGQL RAAGAVAKLIAKEGKSATL LP
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLP 175

[Close]

BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2B_CHLSC (50S ribosomal protein L2-B, chloroplastic OS=Chloranthus spicatus GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 3

Query:  528 TDMPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            TDMPLGTAIHNIEITLGKGGQL RAAGAVAKLIAKEGKSATL LP
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLP 175

[Close]

BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2A_SOYBN (50S ribosomal protein L2-A, chloroplastic OS=Glycine max GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 3

Query:  528 TDMPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            TDMPLGTAIHNIEITLGKGGQL RAAGAVAKLIAKEGKSATL LP
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP 175

[Close]

BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2A_COFAR (50S ribosomal protein L2-A, chloroplastic OS=Coffea arabica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 3

Query:  528 TDMPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            TDMPLGTAIHNIEITLGKGGQL RAAGAVAKLIAKEGKSATL LP
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP 175

[Close]

BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2A_ATRBE (50S ribosomal protein L2-A, chloroplastic OS=Atropa belladonna GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.343e-16
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 3

Query:  528 TDMPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            TDMPLGTAIHNIEITLGKGGQL RAAGAVAKLIAKEGKSATL LP
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP 175

The following BLAST results are available for this feature:

BLAST of CX070578 vs. ExPASy Swiss-Prot

BLAST of CX070578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110


Match Name	E-value	Identity	Description
RK2_BARVE	6.343e-16	95.56	50S ribosomal protein L2, chloroplastic OS=Barbare...	[more]
RK2_ARAHI	6.343e-16	95.56	50S ribosomal protein L2, chloroplastic OS=Arabis ...	[more]
RK2_AMBTC	6.343e-16	95.56	50S ribosomal protein L2, chloroplastic OS=Amborel...	[more]
RK2_ACOCL	6.343e-16	95.56	50S ribosomal protein L2, chloroplastic OS=Acorus ...	[more]
RK2_ACOAM	6.343e-16	95.56	50S ribosomal protein L2, chloroplastic OS=Acorus ...	[more]
RK2B_LIRTU	6.343e-16	95.56	50S ribosomal protein L2-B, chloroplastic OS=Lirio...	[more]
RK2B_CHLSC	6.343e-16	95.56	50S ribosomal protein L2-B, chloroplastic OS=Chlor...	[more]
RK2A_SOYBN	6.343e-16	95.56	50S ribosomal protein L2-A, chloroplastic OS=Glyci...	[more]
RK2A_COFAR	6.343e-16	95.56	50S ribosomal protein L2-A, chloroplastic OS=Coffe...	[more]
RK2A_ATRBE	6.343e-16	95.56	50S ribosomal protein L2-A, chloroplastic OS=Atrop...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS08_17F08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17F08-K15-1-5.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX070578 ID=CX070578; Name=CX070578; organism=Citrus sinensis; type=EST; length=683bp
TAAAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTT
TCAAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAGAGAGGAGGAC
GGGTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGAAAGCTAAGCA
GTGGTAATAGTAATTCGAAAGATTTCCCGGGGAAAAATAGAGATGTCTCC
TACGTTACCCATAATATGTGGAAGTATCGACGTAATTTCATAGAGTCATT
CGGTCTGAATGCTACATGAAGAACATAAGCCAGATGACGGAACGGGAAGA
CCTAGGATGTAGAAGATCATAACATGAGTGATTCGGCAGATTTGGATTCC
TATATATCCACTCATGTGGTACTTCATTATATGATATTGTGGTACTTCAT
TATATGATATATATAAGATCCATCTGTATAGATATCATCATCTACATCCA
GAAAGCCGTATGCTTTGGAAGAAGCTTGTACGGTTTGGGAAGGGGTTTTG
ATTGATCAAAAAGATGAATCTACTTCAACCGATATGCCCTTAGGCACGGC
CATACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAACTAGAG
CAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACA
TTATAATTACCTTTCTGGGGAGGTCCGTTTTGA