CX070578

Overview
NameCX070578
Unique NameCX070578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2_OENGL (50S ribosomal protein L2, chloroplastic OS=Oenothera glazioviana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 3 
Query:  534 MPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            MPLGTA+HNIEITLGKGGQL RAAGAVAKLIAKEGKSATL LP
Sbjct:  132 MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP 174
[Close]
BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2_OENEH (50S ribosomal protein L2, chloroplastic OS=Oenothera elata subsp. hookeri GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 3 
Query:  534 MPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            MPLGTA+HNIEITLGKGGQL RAAGAVAKLIAKEGKSATL LP
Sbjct:  132 MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP 174
[Close]
BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2_OENBI (50S ribosomal protein L2, chloroplastic OS=Oenothera biennis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 3 
Query:  534 MPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            MPLGTA+HNIEITLGKGGQL RAAGAVAKLIAKEGKSATL LP
Sbjct:  132 MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP 174
[Close]
BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2_OENAR (50S ribosomal protein L2, chloroplastic OS=Oenothera argillicola GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.041e-14
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 3 
Query:  534 MPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            MPLGTA+HNIEITLGKGGQL RAAGAVAKLIAKEGKSATL LP
Sbjct:  132 MPLGTALHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLP 174
[Close]
BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2_SACOF (50S ribosomal protein L2, chloroplastic OS=Saccharum officinarum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.481e-14
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 3 
Query:  528 TDMPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            TDMPLGTAIHNIEIT G+GGQL RAAGAVAKLIAKEGK ATL LP
Sbjct:  131 TDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEGKLATLRLP 175
[Close]
BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2_SACHY (50S ribosomal protein L2, chloroplastic OS=Saccharum hybrid GN=rpl2-A PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.481e-14
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 3 
Query:  528 TDMPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            TDMPLGTAIHNIEIT G+GGQL RAAGAVAKLIAKEGK ATL LP
Sbjct:  131 TDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEGKLATLRLP 175
[Close]
BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2_MAIZE (50S ribosomal protein L2, chloroplastic OS=Zea mays GN=rpl2-A PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.481e-14
Identity = 40/45 (88.89%), Postives = 41/45 (91.11%), Query Frame = 3 
Query:  528 TDMPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            TDMPLGTAIHNIEIT G+GGQL RAAGAVAKLIAKEGK ATL LP
Sbjct:  131 TDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIAKEGKLATLRLP 175
[Close]
BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2_PINTH (50S ribosomal protein L2, chloroplastic OS=Pinus thunbergii GN=rpl2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.013e-13
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 3 
Query:  528 TDMPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            T+MPLGTAIHNIEITLGKGGQL RAAGAVA+LIAKE +SATL LP
Sbjct:  134 TNMPLGTAIHNIEITLGKGGQLARAAGAVAELIAKEDRSATLRLP 178
[Close]
BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2_PINKO (50S ribosomal protein L2, chloroplastic OS=Pinus koraiensis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.013e-13
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 3 
Query:  528 TDMPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            T+MPLGTAIHNIEITLGKGGQL RAAGAVA+LIAKE +SATL LP
Sbjct:  134 TNMPLGTAIHNIEITLGKGGQLARAAGAVAELIAKEDRSATLRLP 178
[Close]
BLAST of CX070578 vs. ExPASy Swiss-Prot
Match: RK2_PICAB (50S ribosomal protein L2, chloroplastic OS=Picea abies GN=rpl2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.013e-13
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 3 
Query:  528 TDMPLGTAIHNIEITLGKGGQLTRAAGAVAKLIAKEGKSATL*LP 662
            T+MPLGTAIHNIEITLGKGGQL RAAGAVA+LIAKE +SATL LP
Sbjct:  133 TNMPLGTAIHNIEITLGKGGQLARAAGAVAELIAKEDRSATLRLP 177
The following BLAST results are available for this feature:
BLAST of CX070578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
RK2_OENGL2.041e-1493.0250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENEH2.041e-1493.0250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENBI2.041e-1493.0250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_OENAR2.041e-1493.0250S ribosomal protein L2, chloroplastic OS=Oenothe... [more]
RK2_SACOF3.481e-1488.8950S ribosomal protein L2, chloroplastic OS=Sacchar... [more]
RK2_SACHY3.481e-1488.8950S ribosomal protein L2, chloroplastic OS=Sacchar... [more]
RK2_MAIZE3.481e-1488.8950S ribosomal protein L2, chloroplastic OS=Zea may... [more]
RK2_PINTH1.013e-1386.6750S ribosomal protein L2, chloroplastic OS=Pinus t... [more]
RK2_PINKO1.013e-1386.6750S ribosomal protein L2, chloroplastic OS=Pinus k... [more]
RK2_PICAB1.013e-1386.6750S ribosomal protein L2, chloroplastic OS=Picea a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17F08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17F08-K15-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070578 ID=CX070578; Name=CX070578; organism=Citrus sinensis; type=EST; length=683bp
TAAAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTT
TCAAGCACCGACAGAACCAGAAGCGCCCCTTGTTTCAAAGAGAGGAGGAC
GGGTTATTCACATTTGATTTGATGGTCAGAGGCGAATTGAAAGCTAAGCA
GTGGTAATAGTAATTCGAAAGATTTCCCGGGGAAAAATAGAGATGTCTCC
TACGTTACCCATAATATGTGGAAGTATCGACGTAATTTCATAGAGTCATT
CGGTCTGAATGCTACATGAAGAACATAAGCCAGATGACGGAACGGGAAGA
CCTAGGATGTAGAAGATCATAACATGAGTGATTCGGCAGATTTGGATTCC
TATATATCCACTCATGTGGTACTTCATTATATGATATTGTGGTACTTCAT
TATATGATATATATAAGATCCATCTGTATAGATATCATCATCTACATCCA
GAAAGCCGTATGCTTTGGAAGAAGCTTGTACGGTTTGGGAAGGGGTTTTG
ATTGATCAAAAAGATGAATCTACTTCAACCGATATGCCCTTAGGCACGGC
CATACATAACATAGAAATCACACTTGGAAAGGGTGGACAATTAACTAGAG
CAGCGGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACA
TTATAATTACCTTTCTGGGGAGGTCCGTTTTGA
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