CX070577

Overview
NameCX070577
Unique NameCX070577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_TOBAC (30S ribosomal protein S19, chloroplastic OS=Nicotiana tabacum GN=rps19 PE=3 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 2.720e-44
Identity = 83/92 (90.22%), Postives = 90/92 (97.83%), Query Frame = -2 
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVANHLL+KIDKLNTKAEKEII+TWSRASTIIP M+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_SOLTU (30S ribosomal protein S19, chloroplastic OS=Solanum tuberosum GN=rps19 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.720e-44
Identity = 83/92 (90.22%), Postives = 90/92 (97.83%), Query Frame = -2 
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVANHLL+KIDKLNTKAEKEII+TWSRASTIIP M+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_SOLLC (30S ribosomal protein S19, chloroplastic OS=Solanum lycopersicum GN=rps19 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.720e-44
Identity = 83/92 (90.22%), Postives = 90/92 (97.83%), Query Frame = -2 
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVANHLL+KIDKLNTKAEKEII+TWSRASTIIP M+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_SOLBU (30S ribosomal protein S19, chloroplastic OS=Solanum bulbocastanum GN=rps19 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.720e-44
Identity = 83/92 (90.22%), Postives = 90/92 (97.83%), Query Frame = -2 
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVANHLL+KIDKLNTKAEKEII+TWSRASTIIP M+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_NICSY (30S ribosomal protein S19, chloroplastic OS=Nicotiana sylvestris GN=rps19 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.720e-44
Identity = 83/92 (90.22%), Postives = 90/92 (97.83%), Query Frame = -2 
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVANHLL+KIDKLNTKAEKEII+TWSRASTIIP M+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_ATRBE (30S ribosomal protein S19, chloroplastic OS=Atropa belladonna GN=rps19 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.720e-44
Identity = 83/92 (90.22%), Postives = 90/92 (97.83%), Query Frame = -2 
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVANHLL+KIDKLNTKAEKEII+TWSRASTIIP M+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_POPTR (30S ribosomal protein S19, chloroplastic OS=Populus trichocarpa GN=rps19-1 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.552e-44
Identity = 82/92 (89.13%), Postives = 90/92 (97.83%), Query Frame = -2 
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVANHLLRKI+KLNTKAEK +I+TWSRASTIIP M+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAKNDN+SRR
Sbjct:    1 MTRSLKKNPFVANHLLRKINKLNTKAEKNLIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKNDNKSRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_POPAL (30S ribosomal protein S19, chloroplastic OS=Populus alba GN=rps19 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.552e-44
Identity = 82/92 (89.13%), Postives = 90/92 (97.83%), Query Frame = -2 
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVANHLLRKI+KLNTKAEK +I+TWSRASTIIP M+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAKNDN+SRR
Sbjct:    1 MTRSLKKNPFVANHLLRKINKLNTKAEKNLIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKNDNKSRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_GOSHI (30S ribosomal protein S19, chloroplastic OS=Gossypium hirsutum GN=rps19 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.552e-44
Identity = 83/92 (90.22%), Postives = 90/92 (97.83%), Query Frame = -2 
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            + RSLKKNPFVANHLL+KI++LNTKAEKEIIITWSRASTIIP M+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPTINFRGHAKNDN+SRR
Sbjct:    1 MARSLKKNPFVANHLLKKIERLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNKSRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_GOSBA (30S ribosomal protein S19, chloroplastic OS=Gossypium barbadense GN=rps19 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.552e-44
Identity = 83/92 (90.22%), Postives = 90/92 (97.83%), Query Frame = -2 
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            + RSLKKNPFVANHLL+KI++LNTKAEKEIIITWSRASTIIP M+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPTINFRGHAKNDN+SRR
Sbjct:    1 MARSLKKNPFVANHLLKKIERLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNKSRR 92
The following BLAST results are available for this feature:
BLAST of CX070577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_TOBAC2.720e-4490.2230S ribosomal protein S19, chloroplastic OS=Nicoti... [more]
RR19_SOLTU2.720e-4490.2230S ribosomal protein S19, chloroplastic OS=Solanu... [more]
RR19_SOLLC2.720e-4490.2230S ribosomal protein S19, chloroplastic OS=Solanu... [more]
RR19_SOLBU2.720e-4490.2230S ribosomal protein S19, chloroplastic OS=Solanu... [more]
RR19_NICSY2.720e-4490.2230S ribosomal protein S19, chloroplastic OS=Nicoti... [more]
RR19_ATRBE2.720e-4490.2230S ribosomal protein S19, chloroplastic OS=Atropa... [more]
RR19_POPTR3.552e-4489.1330S ribosomal protein S19, chloroplastic OS=Populu... [more]
RR19_POPAL3.552e-4489.1330S ribosomal protein S19, chloroplastic OS=Populu... [more]
RR19_GOSHI3.552e-4490.2230S ribosomal protein S19, chloroplastic OS=Gossyp... [more]
RR19_GOSBA3.552e-4490.2230S ribosomal protein S19, chloroplastic OS=Gossyp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17F08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17F08-K15-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070577 ID=CX070577; Name=CX070577; organism=Citrus sinensis; type=EST; length=721bp
TTTAATCTTTTCGCAGTATGACCCATAGCTATTCGGCTTTAATAATGAAT
AAACTTCCTTCGTTGAAACCCAGATTGTGAATACCATTTGCTGCTGCAGA
ATAAACCAATTTTAAAATGGGATAACATGCTCGATAAGGCATGAGTTCGA
GTATCATAAGGGTTTCCTCGTAAGAACGTCCACGAATCTGATCAATTACC
CTTCGGGCTTTGTGAGCAGACATACATATATGTTGACCTAAAGCAGATAC
TTCTACCTTCTTCTTTATTATCCTTATCATAAGGTTCACCTCTCACCAAT
GAATCTATATTCACTTTATTAACGACGGGATCTATTATCATTTTTTGCAT
GTCCACGGAAATTGATAGTGGGCGCAAATTCTCCCAATTTATGTCCTACC
ATACGATCTGTTATATAAATAGGCAAATGCTCCCTTCCATTATGGATAGC
AATAGTATGGCCGACCATTGCGGGTATAATGGTAGATGCCCGGGACCAAG
TTATTATTATTTCTTTTTCCGCTTTTGTATTAAGCTTATCGATTTTTCTT
AATAAATGATTCGCTACAAAAGGATTTTTTTTTAGTGAACGTGTCACAGT
TAATTAACTCCTATTTTTTTCTTTTTTTTTTGTAAATTGTAAAAACGAAG
AAAAAAATTCGATTTTCTCTCCTATTTAGTACGGCGGCGAAGAATCAAAT
ATCACTATATTTATTCCTTTT
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