CX070577

Overview
NameCX070577
Unique NameCX070577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_NASOF (30S ribosomal protein S19, chloroplastic OS=Nasturtium officinale GN=rps19 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.763e-43
Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = -2 
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIP M+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_LEPVR (30S ribosomal protein S19, chloroplastic OS=Lepidium virginicum GN=rps19 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.763e-43
Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = -2 
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIP M+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_CRUWA (30S ribosomal protein S19, chloroplastic OS=Crucihimalaya wallichii GN=rps19 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.763e-43
Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = -2 
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIP M+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_CAPBU (30S ribosomal protein S19, chloroplastic OS=Capsella bursa-pastoris GN=rps19 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.763e-43
Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = -2 
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIP M+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_BARVE (30S ribosomal protein S19, chloroplastic OS=Barbarea verna GN=rps19 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.763e-43
Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = -2 
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIP M+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_ARATH (30S ribosomal protein S19, chloroplastic OS=Arabidopsis thaliana GN=rps19 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.763e-43
Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = -2 
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIP M+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_ARAHI (30S ribosomal protein S19, chloroplastic OS=Arabis hirsuta GN=rps19 PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.763e-43
Identity = 83/92 (90.22%), Postives = 88/92 (95.65%), Query Frame = -2 
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIP M+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_NICBI (30S ribosomal protein S19, chloroplastic OS=Nicotiana bigelovii GN=rps19 PE=3 SV=5)

HSP 1 Score: 175.637 bits (444), Expect = 2.303e-43
Identity = 81/92 (88.04%), Postives = 89/92 (96.74%), Query Frame = -2 
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVANHLL+KIDKLNTKAEKEII+TWSRASTIIP  +GHTIAIHNG+EHLPIYIT+ MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTXIGHTIAIHNGKEHLPIYITBSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_GUIAB (30S ribosomal protein S19, chloroplastic OS=Guizotia abyssinica GN=rps19 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.928e-43
Identity = 83/92 (90.22%), Postives = 90/92 (97.83%), Query Frame = -2 
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVAN+LL+KI+KLNTK EKEIIITWSRASTIIP MVGHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANNLLKKINKLNTKEEKEIIITWSRASTIIPIMVGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_DRANE (30S ribosomal protein S19, chloroplastic OS=Draba nemorosa GN=rps19 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.750e-43
Identity = 82/92 (89.13%), Postives = 87/92 (94.57%), Query Frame = -2 
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIP M+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKND RSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDTRSRR 92
The following BLAST results are available for this feature:
BLAST of CX070577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_NASOF1.763e-4390.2230S ribosomal protein S19, chloroplastic OS=Nastur... [more]
RR19_LEPVR1.763e-4390.2230S ribosomal protein S19, chloroplastic OS=Lepidi... [more]
RR19_CRUWA1.763e-4390.2230S ribosomal protein S19, chloroplastic OS=Crucih... [more]
RR19_CAPBU1.763e-4390.2230S ribosomal protein S19, chloroplastic OS=Capsel... [more]
RR19_BARVE1.763e-4390.2230S ribosomal protein S19, chloroplastic OS=Barbar... [more]
RR19_ARATH1.763e-4390.2230S ribosomal protein S19, chloroplastic OS=Arabid... [more]
RR19_ARAHI1.763e-4390.2230S ribosomal protein S19, chloroplastic OS=Arabis... [more]
RR19_NICBI2.303e-4388.0430S ribosomal protein S19, chloroplastic OS=Nicoti... [more]
RR19_GUIAB3.928e-4390.2230S ribosomal protein S19, chloroplastic OS=Guizot... [more]
RR19_DRANE8.750e-4389.1330S ribosomal protein S19, chloroplastic OS=Draba ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17F08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17F08-K15-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070577 ID=CX070577; Name=CX070577; organism=Citrus sinensis; type=EST; length=721bp
TTTAATCTTTTCGCAGTATGACCCATAGCTATTCGGCTTTAATAATGAAT
AAACTTCCTTCGTTGAAACCCAGATTGTGAATACCATTTGCTGCTGCAGA
ATAAACCAATTTTAAAATGGGATAACATGCTCGATAAGGCATGAGTTCGA
GTATCATAAGGGTTTCCTCGTAAGAACGTCCACGAATCTGATCAATTACC
CTTCGGGCTTTGTGAGCAGACATACATATATGTTGACCTAAAGCAGATAC
TTCTACCTTCTTCTTTATTATCCTTATCATAAGGTTCACCTCTCACCAAT
GAATCTATATTCACTTTATTAACGACGGGATCTATTATCATTTTTTGCAT
GTCCACGGAAATTGATAGTGGGCGCAAATTCTCCCAATTTATGTCCTACC
ATACGATCTGTTATATAAATAGGCAAATGCTCCCTTCCATTATGGATAGC
AATAGTATGGCCGACCATTGCGGGTATAATGGTAGATGCCCGGGACCAAG
TTATTATTATTTCTTTTTCCGCTTTTGTATTAAGCTTATCGATTTTTCTT
AATAAATGATTCGCTACAAAAGGATTTTTTTTTAGTGAACGTGTCACAGT
TAATTAACTCCTATTTTTTTCTTTTTTTTTTGTAAATTGTAAAAACGAAG
AAAAAAATTCGATTTTCTCTCCTATTTAGTACGGCGGCGAAGAATCAAAT
ATCACTATATTTATTCCTTTT
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