CX070577

Overview
NameCX070577
Unique NameCX070577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_STRGC (30S ribosomal protein S19 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 49/90 (54.44%), Postives = 71/90 (78.89%), Query Frame = -2 
Query:  322 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 591
            RSLKK PFV  HL++K++      +K++I TWSR STI P+ +G+TIA+++GR+H+P+YI + MVGHKLGEFAPT  ++GHA +D ++RR
Sbjct:    3 RSLKKGPFVDEHLMKKVEAQANDEKKKVIKTWSRRSTIFPSFIGYTIAVYDGRKHVPVYIQEDMVGHKLGEFAPTRTYKGHAADDKKTRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_STREM (30S ribosomal protein S19 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rpsS PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 49/90 (54.44%), Postives = 71/90 (78.89%), Query Frame = -2 
Query:  322 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 591
            RSLKK PFV  HL++K++      +K++I TWSR STI P+ +G+TIA+++GR+H+P+YI + MVGHKLGEFAPT  ++GHA +D ++RR
Sbjct:    3 RSLKKGPFVDEHLMKKVEAQANDEKKKVIKTWSRRSTIFPSFIGYTIAVYDGRKHVPVYIQEDMVGHKLGEFAPTRTYKGHAADDKKTRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_STRE4 (30S ribosomal protein S19 OS=Streptococcus equi subsp. equi (strain 4047) GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 49/90 (54.44%), Postives = 71/90 (78.89%), Query Frame = -2 
Query:  322 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 591
            RSLKK PFV  HL++K++      +K++I TWSR STI P+ +G+TIA+++GR+H+P+YI + MVGHKLGEFAPT  ++GHA +D ++RR
Sbjct:    3 RSLKKGPFVDEHLMKKVEAQANDEKKKVIKTWSRRSTIFPSFIGYTIAVYDGRKHVPVYIQEDMVGHKLGEFAPTRTYKGHAADDKKTRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_STRA5 (30S ribosomal protein S19 OS=Streptococcus agalactiae serotype V GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 49/90 (54.44%), Postives = 71/90 (78.89%), Query Frame = -2 
Query:  322 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 591
            RSLKK PFV  HL++K++      +K++I TWSR STI P+ +G+TIA+++GR+H+P+YI + MVGHKLGEFAPT  ++GHA +D ++RR
Sbjct:    3 RSLKKGPFVDEHLMKKVEAQANDEKKKVIKTWSRRSTIFPSFIGYTIAVYDGRKHVPVYIQEDMVGHKLGEFAPTRTYKGHAADDKKTRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_STRA3 (30S ribosomal protein S19 OS=Streptococcus agalactiae serotype III GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 49/90 (54.44%), Postives = 71/90 (78.89%), Query Frame = -2 
Query:  322 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 591
            RSLKK PFV  HL++K++      +K++I TWSR STI P+ +G+TIA+++GR+H+P+YI + MVGHKLGEFAPT  ++GHA +D ++RR
Sbjct:    3 RSLKKGPFVDEHLMKKVEAQANDEKKKVIKTWSRRSTIFPSFIGYTIAVYDGRKHVPVYIQEDMVGHKLGEFAPTRTYKGHAADDKKTRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_STRA1 (30S ribosomal protein S19 OS=Streptococcus agalactiae serotype Ia GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 49/90 (54.44%), Postives = 71/90 (78.89%), Query Frame = -2 
Query:  322 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 591
            RSLKK PFV  HL++K++      +K++I TWSR STI P+ +G+TIA+++GR+H+P+YI + MVGHKLGEFAPT  ++GHA +D ++RR
Sbjct:    3 RSLKKGPFVDEHLMKKVEAQANDEKKKVIKTWSRRSTIFPSFIGYTIAVYDGRKHVPVYIQEDMVGHKLGEFAPTRTYKGHAADDKKTRR 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_SHISS (30S ribosomal protein S19 OS=Shigella sonnei (strain Ss046) GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = -2 
Query:  322 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 591
            RSLKK PF+  HLL+K++K     +K+ + TWSR STI P M+G TIA+HNGR+H+P+++TD MVGHKLGEFAPT  +RGHA +    ++
Sbjct:    3 RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_SHIFL (30S ribosomal protein S19 OS=Shigella flexneri GN=rpsS PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = -2 
Query:  322 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 591
            RSLKK PF+  HLL+K++K     +K+ + TWSR STI P M+G TIA+HNGR+H+P+++TD MVGHKLGEFAPT  +RGHA +    ++
Sbjct:    3 RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_SHIDS (30S ribosomal protein S19 OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = -2 
Query:  322 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 591
            RSLKK PF+  HLL+K++K     +K+ + TWSR STI P M+G TIA+HNGR+H+P+++TD MVGHKLGEFAPT  +RGHA +    ++
Sbjct:    3 RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_SHIBS (30S ribosomal protein S19 OS=Shigella boydii serotype 4 (strain Sb227) GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = -2 
Query:  322 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 591
            RSLKK PF+  HLL+K++K     +K+ + TWSR STI P M+G TIA+HNGR+H+P+++TD MVGHKLGEFAPT  +RGHA +    ++
Sbjct:    3 RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK 92
The following BLAST results are available for this feature:
BLAST of CX070577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS19_STRGC2.828e-2554.4430S ribosomal protein S19 OS=Streptococcus gordoni... [more]
RS19_STREM2.828e-2554.4430S ribosomal protein S19 OS=Streptococcus equi su... [more]
RS19_STRE42.828e-2554.4430S ribosomal protein S19 OS=Streptococcus equi su... [more]
RS19_STRA52.828e-2554.4430S ribosomal protein S19 OS=Streptococcus agalact... [more]
RS19_STRA32.828e-2554.4430S ribosomal protein S19 OS=Streptococcus agalact... [more]
RS19_STRA12.828e-2554.4430S ribosomal protein S19 OS=Streptococcus agalact... [more]
RS19_SHISS2.828e-2555.5630S ribosomal protein S19 OS=Shigella sonnei (stra... [more]
RS19_SHIFL2.828e-2555.5630S ribosomal protein S19 OS=Shigella flexneri GN=... [more]
RS19_SHIDS2.828e-2555.5630S ribosomal protein S19 OS=Shigella dysenteriae ... [more]
RS19_SHIBS2.828e-2555.5630S ribosomal protein S19 OS=Shigella boydii serot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17F08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17F08-K15-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070577 ID=CX070577; Name=CX070577; organism=Citrus sinensis; type=EST; length=721bp
TTTAATCTTTTCGCAGTATGACCCATAGCTATTCGGCTTTAATAATGAAT
AAACTTCCTTCGTTGAAACCCAGATTGTGAATACCATTTGCTGCTGCAGA
ATAAACCAATTTTAAAATGGGATAACATGCTCGATAAGGCATGAGTTCGA
GTATCATAAGGGTTTCCTCGTAAGAACGTCCACGAATCTGATCAATTACC
CTTCGGGCTTTGTGAGCAGACATACATATATGTTGACCTAAAGCAGATAC
TTCTACCTTCTTCTTTATTATCCTTATCATAAGGTTCACCTCTCACCAAT
GAATCTATATTCACTTTATTAACGACGGGATCTATTATCATTTTTTGCAT
GTCCACGGAAATTGATAGTGGGCGCAAATTCTCCCAATTTATGTCCTACC
ATACGATCTGTTATATAAATAGGCAAATGCTCCCTTCCATTATGGATAGC
AATAGTATGGCCGACCATTGCGGGTATAATGGTAGATGCCCGGGACCAAG
TTATTATTATTTCTTTTTCCGCTTTTGTATTAAGCTTATCGATTTTTCTT
AATAAATGATTCGCTACAAAAGGATTTTTTTTTAGTGAACGTGTCACAGT
TAATTAACTCCTATTTTTTTCTTTTTTTTTTGTAAATTGTAAAAACGAAG
AAAAAAATTCGATTTTCTCTCCTATTTAGTACGGCGGCGAAGAATCAAAT
ATCACTATATTTATTCCTTTT
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