CX070577

Overview
NameCX070577
Unique NameCX070577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_ECOLC (30S ribosomal protein S19 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = -2 
Query:  322 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 591
            RSLKK PF+  HLL+K++K     +K+ + TWSR STI P M+G TIA+HNGR+H+P+++TD MVGHKLGEFAPT  +RGHA +    ++
Sbjct:    3 RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_ECOL6 (30S ribosomal protein S19 OS=Escherichia coli O6 GN=rpsS PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = -2 
Query:  322 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 591
            RSLKK PF+  HLL+K++K     +K+ + TWSR STI P M+G TIA+HNGR+H+P+++TD MVGHKLGEFAPT  +RGHA +    ++
Sbjct:    3 RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_ECOL5 (30S ribosomal protein S19 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rpsS PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = -2 
Query:  322 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 591
            RSLKK PF+  HLL+K++K     +K+ + TWSR STI P M+G TIA+HNGR+H+P+++TD MVGHKLGEFAPT  +RGHA +    ++
Sbjct:    3 RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_ECOK1 (30S ribosomal protein S19 OS=Escherichia coli O1:K1 / APEC GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = -2 
Query:  322 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 591
            RSLKK PF+  HLL+K++K     +K+ + TWSR STI P M+G TIA+HNGR+H+P+++TD MVGHKLGEFAPT  +RGHA +    ++
Sbjct:    3 RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_ECOHS (30S ribosomal protein S19 OS=Escherichia coli O9:H4 (strain HS) GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = -2 
Query:  322 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 591
            RSLKK PF+  HLL+K++K     +K+ + TWSR STI P M+G TIA+HNGR+H+P+++TD MVGHKLGEFAPT  +RGHA +    ++
Sbjct:    3 RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_ECODH (30S ribosomal protein S19 OS=Escherichia coli (strain K12 / DH10B) GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = -2 
Query:  322 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 591
            RSLKK PF+  HLL+K++K     +K+ + TWSR STI P M+G TIA+HNGR+H+P+++TD MVGHKLGEFAPT  +RGHA +    ++
Sbjct:    3 RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_ECOBW (30S ribosomal protein S19 OS=Escherichia coli (strain K12 / BW2952) GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = -2 
Query:  322 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 591
            RSLKK PF+  HLL+K++K     +K+ + TWSR STI P M+G TIA+HNGR+H+P+++TD MVGHKLGEFAPT  +RGHA +    ++
Sbjct:    3 RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_ECO8A (30S ribosomal protein S19 OS=Escherichia coli O8 (strain IAI1) GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = -2 
Query:  322 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 591
            RSLKK PF+  HLL+K++K     +K+ + TWSR STI P M+G TIA+HNGR+H+P+++TD MVGHKLGEFAPT  +RGHA +    ++
Sbjct:    3 RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_ECO81 (30S ribosomal protein S19 OS=Escherichia coli O81 (strain ED1a) GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = -2 
Query:  322 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 591
            RSLKK PF+  HLL+K++K     +K+ + TWSR STI P M+G TIA+HNGR+H+P+++TD MVGHKLGEFAPT  +RGHA +    ++
Sbjct:    3 RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK 92
[Close]
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_ECO7I (30S ribosomal protein S19 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = -2 
Query:  322 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 591
            RSLKK PF+  HLL+K++K     +K+ + TWSR STI P M+G TIA+HNGR+H+P+++TD MVGHKLGEFAPT  +RGHA +    ++
Sbjct:    3 RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK 92
The following BLAST results are available for this feature:
BLAST of CX070577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS19_ECOLC2.828e-2555.5630S ribosomal protein S19 OS=Escherichia coli (str... [more]
RS19_ECOL62.828e-2555.5630S ribosomal protein S19 OS=Escherichia coli O6 G... [more]
RS19_ECOL52.828e-2555.5630S ribosomal protein S19 OS=Escherichia coli O6:K... [more]
RS19_ECOK12.828e-2555.5630S ribosomal protein S19 OS=Escherichia coli O1:K... [more]
RS19_ECOHS2.828e-2555.5630S ribosomal protein S19 OS=Escherichia coli O9:H... [more]
RS19_ECODH2.828e-2555.5630S ribosomal protein S19 OS=Escherichia coli (str... [more]
RS19_ECOBW2.828e-2555.5630S ribosomal protein S19 OS=Escherichia coli (str... [more]
RS19_ECO8A2.828e-2555.5630S ribosomal protein S19 OS=Escherichia coli O8 (... [more]
RS19_ECO812.828e-2555.5630S ribosomal protein S19 OS=Escherichia coli O81 ... [more]
RS19_ECO7I2.828e-2555.5630S ribosomal protein S19 OS=Escherichia coli O7:K... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17F08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17F08-K15-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070577 ID=CX070577; Name=CX070577; organism=Citrus sinensis; type=EST; length=721bp
TTTAATCTTTTCGCAGTATGACCCATAGCTATTCGGCTTTAATAATGAAT
AAACTTCCTTCGTTGAAACCCAGATTGTGAATACCATTTGCTGCTGCAGA
ATAAACCAATTTTAAAATGGGATAACATGCTCGATAAGGCATGAGTTCGA
GTATCATAAGGGTTTCCTCGTAAGAACGTCCACGAATCTGATCAATTACC
CTTCGGGCTTTGTGAGCAGACATACATATATGTTGACCTAAAGCAGATAC
TTCTACCTTCTTCTTTATTATCCTTATCATAAGGTTCACCTCTCACCAAT
GAATCTATATTCACTTTATTAACGACGGGATCTATTATCATTTTTTGCAT
GTCCACGGAAATTGATAGTGGGCGCAAATTCTCCCAATTTATGTCCTACC
ATACGATCTGTTATATAAATAGGCAAATGCTCCCTTCCATTATGGATAGC
AATAGTATGGCCGACCATTGCGGGTATAATGGTAGATGCCCGGGACCAAG
TTATTATTATTTCTTTTTCCGCTTTTGTATTAAGCTTATCGATTTTTCTT
AATAAATGATTCGCTACAAAAGGATTTTTTTTTAGTGAACGTGTCACAGT
TAATTAACTCCTATTTTTTTCTTTTTTTTTTGTAAATTGTAAAAACGAAG
AAAAAAATTCGATTTTCTCTCCTATTTAGTACGGCGGCGAAGAATCAAAT
ATCACTATATTTATTCCTTTT
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