CX070577

Overview
NameCX070577
Unique NameCX070577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_VIBVY (30S ribosomal protein S19 OS=Vibrio vulnificus (strain YJ016) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.824e-25
Identity = 49/90 (54.44%), Postives = 68/90 (75.56%), Query Frame = -2
Query:  322 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 591
            RSLKK PF+  HLL+K++K     +K+ + TWSR S IIP M+G TIA+HNGR+H+P+++T+ M+GHKLGEFAPT  +RGHA +    +R
Sbjct:    3 RSLKKGPFIDLHLLKKVEKAVESGDKKPLKTWSRRSMIIPTMIGLTIAVHNGRQHVPVFVTEEMIGHKLGEFAPTRTYRGHAADKKAKKR 92          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_VIBVU (30S ribosomal protein S19 OS=Vibrio vulnificus GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.824e-25
Identity = 49/90 (54.44%), Postives = 68/90 (75.56%), Query Frame = -2
Query:  322 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 591
            RSLKK PF+  HLL+K++K     +K+ + TWSR S IIP M+G TIA+HNGR+H+P+++T+ M+GHKLGEFAPT  +RGHA +    +R
Sbjct:    3 RSLKKGPFIDLHLLKKVEKAVESGDKKPLKTWSRRSMIIPTMIGLTIAVHNGRQHVPVFVTEEMIGHKLGEFAPTRTYRGHAADKKAKKR 92          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_STAS1 (30S ribosomal protein S19 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.824e-25
Identity = 47/92 (51.09%), Postives = 71/92 (77.17%), Query Frame = -2
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            + RS+KK PF  +HL +K++  +   +K++I TWSR STI P  +GHT A+++GR+H+P+++T+ MVGHKLGEFAPT  F+GHA +D ++RR
Sbjct:    1 MARSIKKGPFADDHLKKKVEAQSGSEKKQVIKTWSRRSTIFPDFIGHTFAVYDGRKHVPVFVTEDMVGHKLGEFAPTRTFKGHAADDKKTRR 92          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_PASMU (30S ribosomal protein S19 OS=Pasteurella multocida GN=rpsS PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.824e-25
Identity = 50/82 (60.98%), Postives = 66/82 (80.49%), Query Frame = -2
Query:  346 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA 591
            RSLKK PF+  HLL+K++K     +K+ I TWSR S IIP+M+G TIA+HNGR+H+P+Y++D M+GHKLGEFAPT  +RGHA
Sbjct:    3 RSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSMIGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHA 84          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_MANSM (30S ribosomal protein S19 OS=Mannheimia succiniciproducens (strain MBEL55E) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.824e-25
Identity = 50/82 (60.98%), Postives = 66/82 (80.49%), Query Frame = -2
Query:  346 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA 591
            RSLKK PF+  HLL+K++K     +K+ I TWSR S IIP+M+G TIA+HNGR+H+P+Y++D M+GHKLGEFAPT  +RGHA
Sbjct:    3 RSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSMIGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHA 84          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_HAES2 (30S ribosomal protein S19 OS=Haemophilus somnus (strain 2336) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.824e-25
Identity = 50/82 (60.98%), Postives = 66/82 (80.49%), Query Frame = -2
Query:  346 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA 591
            RSLKK PF+  HLL+K++K     +K+ I TWSR S IIP+M+G TIA+HNGR+H+P+Y++D M+GHKLGEFAPT  +RGHA
Sbjct:    3 RSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSMIGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHA 84          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_HAES1 (30S ribosomal protein S19 OS=Haemophilus somnus (strain 129Pt) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.824e-25
Identity = 50/82 (60.98%), Postives = 66/82 (80.49%), Query Frame = -2
Query:  346 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA 591
            RSLKK PF+  HLL+K++K     +K+ I TWSR S IIP+M+G TIA+HNGR+H+P+Y++D M+GHKLGEFAPT  +RGHA
Sbjct:    3 RSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSMIGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHA 84          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_HAEPS (30S ribosomal protein S19 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.824e-25
Identity = 50/82 (60.98%), Postives = 66/82 (80.49%), Query Frame = -2
Query:  346 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA 591
            RSLKK PF+  HLL+K++K     +K+ I TWSR S IIP+M+G TIA+HNGR+H+P+Y++D M+GHKLGEFAPT  +RGHA
Sbjct:    3 RSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSMIGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHA 84          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_HAEIN (30S ribosomal protein S19 OS=Haemophilus influenzae GN=rpsS PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.824e-25
Identity = 50/82 (60.98%), Postives = 66/82 (80.49%), Query Frame = -2
Query:  346 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA 591
            RSLKK PF+  HLL+K++K     +K+ I TWSR S IIP+M+G TIA+HNGR+H+P+Y++D M+GHKLGEFAPT  +RGHA
Sbjct:    3 RSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSMIGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHA 84          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RS19_HAEIG (30S ribosomal protein S19 OS=Haemophilus influenzae (strain PittGG) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.824e-25
Identity = 50/82 (60.98%), Postives = 66/82 (80.49%), Query Frame = -2
Query:  346 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA 591
            RSLKK PF+  HLL+K++K     +K+ I TWSR S IIP+M+G TIA+HNGR+H+P+Y++D M+GHKLGEFAPT  +RGHA
Sbjct:    3 RSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSMIGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHA 84          
The following BLAST results are available for this feature:
BLAST of CX070577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS19_VIBVY4.824e-2554.4430S ribosomal protein S19 OS=Vibrio vulnificus (st... [more]
RS19_VIBVU4.824e-2554.4430S ribosomal protein S19 OS=Vibrio vulnificus GN=... [more]
RS19_STAS14.824e-2551.0930S ribosomal protein S19 OS=Staphylococcus saprop... [more]
RS19_PASMU4.824e-2560.9830S ribosomal protein S19 OS=Pasteurella multocida... [more]
RS19_MANSM4.824e-2560.9830S ribosomal protein S19 OS=Mannheimia succinicip... [more]
RS19_HAES24.824e-2560.9830S ribosomal protein S19 OS=Haemophilus somnus (s... [more]
RS19_HAES14.824e-2560.9830S ribosomal protein S19 OS=Haemophilus somnus (s... [more]
RS19_HAEPS4.824e-2560.9830S ribosomal protein S19 OS=Haemophilus parasuis ... [more]
RS19_HAEIN4.824e-2560.9830S ribosomal protein S19 OS=Haemophilus influenza... [more]
RS19_HAEIG4.824e-2560.9830S ribosomal protein S19 OS=Haemophilus influenza... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_17F08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17F08-K15-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070577 ID=CX070577; Name=CX070577; organism=Citrus sinensis; type=EST; length=721bp
TTTAATCTTTTCGCAGTATGACCCATAGCTATTCGGCTTTAATAATGAAT
AAACTTCCTTCGTTGAAACCCAGATTGTGAATACCATTTGCTGCTGCAGA
ATAAACCAATTTTAAAATGGGATAACATGCTCGATAAGGCATGAGTTCGA
GTATCATAAGGGTTTCCTCGTAAGAACGTCCACGAATCTGATCAATTACC
CTTCGGGCTTTGTGAGCAGACATACATATATGTTGACCTAAAGCAGATAC
TTCTACCTTCTTCTTTATTATCCTTATCATAAGGTTCACCTCTCACCAAT
GAATCTATATTCACTTTATTAACGACGGGATCTATTATCATTTTTTGCAT
GTCCACGGAAATTGATAGTGGGCGCAAATTCTCCCAATTTATGTCCTACC
ATACGATCTGTTATATAAATAGGCAAATGCTCCCTTCCATTATGGATAGC
AATAGTATGGCCGACCATTGCGGGTATAATGGTAGATGCCCGGGACCAAG
TTATTATTATTTCTTTTTCCGCTTTTGTATTAAGCTTATCGATTTTTCTT
AATAAATGATTCGCTACAAAAGGATTTTTTTTTAGTGAACGTGTCACAGT
TAATTAACTCCTATTTTTTTCTTTTTTTTTTGTAAATTGTAAAAACGAAG
AAAAAAATTCGATTTTCTCTCCTATTTAGTACGGCGGCGAAGAATCAAAT
ATCACTATATTTATTCCTTTT
back to top