CX070577

Overview
NameCX070577
Unique NameCX070577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_PINKO (30S ribosomal protein S19, chloroplastic OS=Pinus koraiensis GN=rps19 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.230e-38
Identity = 72/92 (78.26%), Postives = 83/92 (90.22%), Query Frame = -2
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            + RSLKKNPFVANHLLRKI  LN K EK+II+TWSRAS I+PAM+GHTIA+HNGREHLPIY+TDRMV HKLGEFAPT+ F+GHA+ND +SRR
Sbjct:    1 MARSLKKNPFVANHLLRKIKNLNIKKEKKIIVTWSRASVIVPAMIGHTIAVHNGREHLPIYVTDRMVDHKLGEFAPTLLFQGHARNDKKSRR 92          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_DRIGR (30S ribosomal protein S19, chloroplastic OS=Drimys granadensis GN=rps19 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.230e-38
Identity = 74/92 (80.43%), Postives = 83/92 (90.22%), Query Frame = -2
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKKNPFV NHLL KI+KLN + EKEII+TWSRASTIIP M+GHTIAIHNG+ HLPIYI DRMVGHKLGEFAPT+ FRGHA+N+N SRR
Sbjct:    1 MTRSLKKNPFVDNHLLGKIEKLNMREEKEIIVTWSRASTIIPTMIGHTIAIHNGKAHLPIYIIDRMVGHKLGEFAPTLTFRGHARNNNVSRR 92          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_CUSEX (30S ribosomal protein S19, plastid OS=Cuscuta exaltata GN=rps19 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.230e-38
Identity = 76/92 (82.61%), Postives = 82/92 (89.13%), Query Frame = -2
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            + RSLKKNPFVA++L +KIDKLN KAEKEIIITWSR STIIP MVGHTIAIH G+EHLPIYI D MVGHKLGEFA T NFRGHAK+DNRSRR
Sbjct:    1 MARSLKKNPFVADNLFKKIDKLNIKAEKEIIITWSRGSTIIPIMVGHTIAIHTGKEHLPIYIMDHMVGHKLGEFASTFNFRGHAKSDNRSRR 92          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_NYMAL (30S ribosomal protein S19, chloroplastic OS=Nymphaea alba GN=rps19 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.913e-38
Identity = 74/92 (80.43%), Postives = 83/92 (90.22%), Query Frame = -2
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            + RS KKNPFVANHLL KI+KLN   E+ II+TWSRASTII AMVGHTIA+HNG+EHLPIYIT+RMVGHKLGEFAPT+ FRGHA+NDNRSRR
Sbjct:    1 MARSSKKNPFVANHLLSKIEKLNKAEERSIIVTWSRASTIIFAMVGHTIAVHNGKEHLPIYITERMVGHKLGEFAPTLTFRGHARNDNRSRR 92          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_LEMMI (30S ribosomal protein S19, chloroplastic OS=Lemna minor GN=rps19 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.969e-38
Identity = 74/92 (80.43%), Postives = 84/92 (91.30%), Query Frame = -2
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRS+KKNPFVANHLL KI+KLN + EKEII+TWSRASTIIP M+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT +F  HA+ND +SRR
Sbjct:    1 MTRSIKKNPFVANHLLVKIEKLNMRQEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTRSFGKHARNDIKSRR 92          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_PICAB (30S ribosomal protein S19, chloroplastic OS=Picea abies GN=rps19 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.475e-38
Identity = 71/92 (77.17%), Postives = 82/92 (89.13%), Query Frame = -2
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            + RSLKKNPFVANH LRKI  LN K EK+II+TWSRAS I+PAM+GHTIA+HNGREHLPIY+TDRMV HKLGEFAPT+ F+GHA+ND +SRR
Sbjct:    1 MARSLKKNPFVANHSLRKIQNLNIKEEKKIIVTWSRASVIVPAMIGHTIAVHNGREHLPIYVTDRMVDHKLGEFAPTLLFQGHARNDKKSRR 92          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_PINTH (30S ribosomal protein S19, chloroplastic OS=Pinus thunbergii GN=rps19 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.107e-37
Identity = 71/92 (77.17%), Postives = 82/92 (89.13%), Query Frame = -2
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            + RSLKKNPFVANH LRKI  LN K EK+II+TWSRAS I+PAM+GHTIA+HNGREHLPIY+TDRMV HKLGEFAPT+ F+GHA+ND +SRR
Sbjct:    1 MARSLKKNPFVANHSLRKIKNLNIKEEKKIIVTWSRASVIVPAMIGHTIAVHNGREHLPIYVTDRMVDHKLGEFAPTLLFQGHARNDKKSRR 92          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_PHYPA (30S ribosomal protein S19, chloroplastic OS=Physcomitrella patens GN=rps19 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.107e-37
Identity = 71/92 (77.17%), Postives = 84/92 (91.30%), Query Frame = -2
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +TRSLKK PFVA+HLL+KI+ LN K EK+IIITWSRASTI+P M+GHTIA++NG+EHLPIYITDRM+GHKLGEFAPT NFRGH K+D +SRR
Sbjct:    1 MTRSLKKGPFVADHLLKKIEDLNLKKEKKIIITWSRASTIVPTMIGHTIAVYNGQEHLPIYITDRMIGHKLGEFAPTRNFRGHTKSDKKSRR 92          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_CUSGR (30S ribosomal protein S19, plastid OS=Cuscuta gronovii GN=rps19 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.206e-37
Identity = 73/92 (79.35%), Postives = 82/92 (89.13%), Query Frame = -2
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            +T  LKKNPFVAN+LL+KI+KLN KA+KEIIITWSR STIIP M+GHTIAIHNG+EHLPIYI D MVGHKLGEFA T+NFRGH K DN+SRR
Sbjct:    1 MTYLLKKNPFVANNLLKKINKLNRKAQKEIIITWSRGSTIIPIMIGHTIAIHNGKEHLPIYIMDDMVGHKLGEFAATLNFRGHEKGDNKSRR 92          
BLAST of CX070577 vs. ExPASy Swiss-Prot
Match: RR19_CUSRE (30S ribosomal protein S19, plastid OS=Cuscuta reflexa GN=rps19 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.493e-37
Identity = 75/92 (81.52%), Postives = 80/92 (86.96%), Query Frame = -2
Query:  322 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPAMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 597
            + RSLKKNPFVA +LL+KI KLN K EKEIIITWSR STIIP MVGHTIAIH G+EHLPIYI D MVGHKLGEFA T+NFRGHAK DNRSRR
Sbjct:    1 MARSLKKNPFVAKNLLKKIYKLNIKTEKEIIITWSRGSTIIPIMVGHTIAIHTGKEHLPIYIMDHMVGHKLGEFAFTLNFRGHAKTDNRSRR 92          
The following BLAST results are available for this feature:
BLAST of CX070577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_PINKO2.230e-3878.2630S ribosomal protein S19, chloroplastic OS=Pinus ... [more]
RR19_DRIGR2.230e-3880.4330S ribosomal protein S19, chloroplastic OS=Drimys... [more]
RR19_CUSEX2.230e-3882.6130S ribosomal protein S19, plastid OS=Cuscuta exal... [more]
RR19_NYMAL2.913e-3880.4330S ribosomal protein S19, chloroplastic OS=Nympha... [more]
RR19_LEMMI4.969e-3880.4330S ribosomal protein S19, chloroplastic OS=Lemna ... [more]
RR19_PICAB8.475e-3877.1730S ribosomal protein S19, chloroplastic OS=Picea ... [more]
RR19_PINTH1.107e-3777.1730S ribosomal protein S19, chloroplastic OS=Pinus ... [more]
RR19_PHYPA1.107e-3777.1730S ribosomal protein S19, chloroplastic OS=Physco... [more]
RR19_CUSGR4.206e-3779.3530S ribosomal protein S19, plastid OS=Cuscuta gron... [more]
RR19_CUSRE5.493e-3781.5230S ribosomal protein S19, plastid OS=Cuscuta refl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17F08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17F08-K15-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070577 ID=CX070577; Name=CX070577; organism=Citrus sinensis; type=EST; length=721bp
TTTAATCTTTTCGCAGTATGACCCATAGCTATTCGGCTTTAATAATGAAT
AAACTTCCTTCGTTGAAACCCAGATTGTGAATACCATTTGCTGCTGCAGA
ATAAACCAATTTTAAAATGGGATAACATGCTCGATAAGGCATGAGTTCGA
GTATCATAAGGGTTTCCTCGTAAGAACGTCCACGAATCTGATCAATTACC
CTTCGGGCTTTGTGAGCAGACATACATATATGTTGACCTAAAGCAGATAC
TTCTACCTTCTTCTTTATTATCCTTATCATAAGGTTCACCTCTCACCAAT
GAATCTATATTCACTTTATTAACGACGGGATCTATTATCATTTTTTGCAT
GTCCACGGAAATTGATAGTGGGCGCAAATTCTCCCAATTTATGTCCTACC
ATACGATCTGTTATATAAATAGGCAAATGCTCCCTTCCATTATGGATAGC
AATAGTATGGCCGACCATTGCGGGTATAATGGTAGATGCCCGGGACCAAG
TTATTATTATTTCTTTTTCCGCTTTTGTATTAAGCTTATCGATTTTTCTT
AATAAATGATTCGCTACAAAAGGATTTTTTTTTAGTGAACGTGTCACAGT
TAATTAACTCCTATTTTTTTCTTTTTTTTTTGTAAATTGTAAAAACGAAG
AAAAAAATTCGATTTTCTCTCCTATTTAGTACGGCGGCGAAGAATCAAAT
ATCACTATATTTATTCCTTTT
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