CX070575

Overview
NameCX070575
Unique NameCX070575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070575 vs. ExPASy Swiss-Prot
Match: CML4_ARATH (Calmodulin-like protein 4 OS=Arabidopsis thaliana GN=CML4 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.290e-22
Identity = 51/132 (38.64%), Postives = 87/132 (65.91%), Query Frame = -3
Query:  190 VFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIK--CSVDGCVAMIKPVDADGDGNVNFEEFRSMM 579
            VF  FD N DG+I+  EL   L+++G    +++L+++++ +D + DG + ++EFE++  +      E ++R+AF+++DQD +G I+ EELN V+  LG+K   +++ C  MI  VD DGDG VN++EF  MM
Sbjct:   55 VFQMFDKNGDGRITKEELNDSLENLGIFMPDKDLIQMIQKMDANGDGCVDINEFESLYGSIVEEKEEGDMRDAFNVFDQDGDGFITVEELNSVMTSLGLKQGKTLECCKEMIMQVDEDGDGRVNYKEFLQMM 186          
BLAST of CX070575 vs. ExPASy Swiss-Prot
Match: CML33_ARATH (Probable calcium-binding protein CML33 OS=Arabidopsis thaliana GN=CML33 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.290e-22
Identity = 53/126 (42.06%), Postives = 79/126 (62.70%), Query Frame = -3
Query:  211 VFNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETIC---RTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNF 579
            +F +FD +KDGKIS  E    + ++  S   E+LV +   LDT+ DG +  ++F +       SSG   E EL++AF LYD + +G ISA EL++V+ RLG KC+V+ CV M++ +D DGDG + F
Sbjct:    9 IFERFDTSKDGKISWEEFRDAIHALSPSIPSEKLVEMFIQLDTNGDGQVDAAKFASCMDQTAQSSGGDVEKELKDAFKLYDINCDGKISANELHVVMTRLGEKCTVESCVGMVQAIDVDGDGYIRF 134          
BLAST of CX070575 vs. ExPASy Swiss-Prot
Match: CML4_ORYSJ (Calmodulin-like protein 4 OS=Oryza sativa subsp. japonica GN=CML4 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.296e-22
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = -3
Query:  190 FNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEF-ETICRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 576
            F  FD N DG I+L ELA V +S+G    ++EL  +M ++DTD +G I   EF   I R      G+ EL+EAF++ D+D+NG IS  EL  V+  LG K + +    MI+  D DGDG VN++EF  MM
Sbjct:   16 FLLFDKNGDGCITLEELAAVTRSLGLEPTDQELNDMMREVDTDGNGIIDFQEFLSLIARKMKDGDGDEELKEAFEVLDKDQNGFISPTELRTVMTNLGEKMTDEEVEQMIREADTDGDGQVNYDEFVIMM 145          
BLAST of CX070575 vs. ExPASy Swiss-Prot
Match: CALM_STRIE (Calmodulin OS=Strongylocentrotus intermedius PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 4.296e-22
Identity = 57/132 (43.18%), Postives = 81/132 (61.36%), Query Frame = -3
Query:  184 FNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 576
            F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   24 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 155          
BLAST of CX070575 vs. ExPASy Swiss-Prot
Match: CALM_PATSP (Calmodulin OS=Patinopecten sp. PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.296e-22
Identity = 57/132 (43.18%), Postives = 81/132 (61.36%), Query Frame = -3
Query:  184 FNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 576
            F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D DG I   EF T+  R       E E+REAF ++D+D +G ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   17 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGDGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 148          
BLAST of CX070575 vs. ExPASy Swiss-Prot
Match: CALM_OREMO (Calmodulin OS=Oreochromis mossambicus GN=calm PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 4.296e-22
Identity = 57/131 (43.51%), Postives = 79/131 (60.31%), Query Frame = -3
Query:  187 FNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 576
            F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   17 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRYVMTNLGEKLTDEXVDEMIREADIDGDGQVNYEEFVQMMT 147          
BLAST of CX070575 vs. ExPASy Swiss-Prot
Match: CALM_LOCMI (Calmodulin OS=Locusta migratoria PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.296e-22
Identity = 57/132 (43.18%), Postives = 81/132 (61.36%), Query Frame = -3
Query:  184 FNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 576
            F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   17 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 148          
BLAST of CX070575 vs. ExPASy Swiss-Prot
Match: CALM_DROME (Calmodulin OS=Drosophila melanogaster GN=Cam PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.296e-22
Identity = 57/132 (43.18%), Postives = 81/132 (61.36%), Query Frame = -3
Query:  184 FNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 576
            F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   17 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 148          
BLAST of CX070575 vs. ExPASy Swiss-Prot
Match: CALM_CIOIN (Calmodulin OS=Ciona intestinalis PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 4.296e-22
Identity = 57/131 (43.51%), Postives = 80/131 (61.07%), Query Frame = -3
Query:  187 FNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 576
            F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT
Sbjct:   17 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVNMMT 147          
BLAST of CX070575 vs. ExPASy Swiss-Prot
Match: CALM_APLCA (Calmodulin OS=Aplysia californica GN=CAM PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.296e-22
Identity = 57/132 (43.18%), Postives = 81/132 (61.36%), Query Frame = -3
Query:  184 FNQFDANKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFDLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 576
            F+ FD + DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   17 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 148          
The following BLAST results are available for this feature:
BLAST of CX070575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 310
Match NameE-valueIdentityDescription
CML4_ARATH3.290e-2238.64Calmodulin-like protein 4 OS=Arabidopsis thaliana ... [more]
CML33_ARATH3.290e-2242.06Probable calcium-binding protein CML33 OS=Arabidop... [more]
CML4_ORYSJ4.296e-2243.85Calmodulin-like protein 4 OS=Oryza sativa subsp. j... [more]
CALM_STRIE4.296e-2243.18Calmodulin OS=Strongylocentrotus intermedius PE=2 ... [more]
CALM_PATSP4.296e-2243.18Calmodulin OS=Patinopecten sp. PE=1 SV=2[more]
CALM_OREMO4.296e-2243.51Calmodulin OS=Oreochromis mossambicus GN=calm PE=2... [more]
CALM_LOCMI4.296e-2243.18Calmodulin OS=Locusta migratoria PE=1 SV=2[more]
CALM_DROME4.296e-2243.18Calmodulin OS=Drosophila melanogaster GN=Cam PE=1 ... [more]
CALM_CIOIN4.296e-2243.51Calmodulin OS=Ciona intestinalis PE=2 SV=3[more]
CALM_APLCA4.296e-2243.18Calmodulin OS=Aplysia californica GN=CAM PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17F07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17F07-K13-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070575 ID=CX070575; Name=CX070575; organism=Citrus sinensis; type=EST; length=581bp
TTTTTTTTTTTTTTTTTAAACCATTGAAAATGCATCAGAGTTTATTAACA
TTAAAAGTAGTAGACACAAGTAGGCACGGAGGAAAACGACAGCCTATAAA
CGGACGCAAGTTAATATCGGTACGGCCGACCATCGAATCACCGTCGAAAC
CAAAATCTACGGCGCAGGACCAGGTTTAAGAGAAGTAGTCATCATCGAAC
GAAACTCTTCAAAATTCACATTGCCATCACCATCGGCATCCACCGGCTTA
ATCATCGCCACACATCCATCAACCGAGCACTTAATTCCGAGCCTGTTCAA
CACCAAATTCAACTCCTCCGCCGAAATCAAGCCGTTCTTGTCCTGATCGT
AGAGATCAAACGCCTCGCGGAGCTCGGCCTCGCCGGCGGCACCAGAGGAG
GTCCGGCAGATCGTTTCGAACTCCGACAGGCTGATGAATCCGTCCTTGTC
GGTATCGAGATCCTCCATGACGCGGACGAGCTCCTCCTCTTTGTAGCTCG
ATCCCATTGATTTCAAAACGGTCGCCAGCTCCGTCAGCGAGATCTTGCCG
TCCTTGTTCGCGTCGAACTGGTTGAAGACCT
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