CX070572

Overview
NameCX070572
Unique NameCX070572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070572 vs. ExPASy Swiss-Prot
Match: NUOB_NITHX (NADH-quinone oxidoreductase subunit B OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=nuoB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.157e-37
Identity = 70/145 (48.28%), Postives = 103/145 (71.03%), Query Frame = -1
Query:    1 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAIKKLRKKISRGG 435
            F    ++DL  W+R  SL  + +G +CC +E   +   R+D +R+G  PR+SPRQ+D+++ AGT+T KMAP+L ++Y+QMPEP+YVI+MG+C   GG +   SYS VRG D+++P+DVY+PGCPP  EA++  I  L+KKI R G
Sbjct:   55 FFVAATDDLITWARTGSLMWMTFGLACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPIDVYVPGCPPTAEALLYGILLLQKKIRRTG 198          
BLAST of CX070572 vs. ExPASy Swiss-Prot
Match: NUOB_LEPBP (NADH-quinone oxidoreductase subunit B OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=nuoB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.157e-37
Identity = 72/146 (49.32%), Postives = 104/146 (71.23%), Query Frame = -1
Query:    1 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLV-PRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAIKKLRKKISRGG 435
            F   T +++  W +  SLWP  + T+CC IE+ S   + +D  R+G   P  SPRQAD+IL  GT+T KMAP L ++Y+Q+ EPK+VI++GAC  +GGMF T  Y  ++GVD+++PVDVY+PGCPP+PEA++DA+ KL+KK+   G
Sbjct:   18 FQVATLDNVVQWGQSFSLWPYPFATACCGIEYMSTACADYDIARFGAERPSFSPRQADMILVLGTITYKMAPVLRQIYDQLAEPKFVISVGACASSGGMFHT--YGVLQGVDRILPVDVYVPGCPPRPEAILDALVKLQKKVQSQG 161          
BLAST of CX070572 vs. ExPASy Swiss-Prot
Match: NUOB_LEPBA (NADH-quinone oxidoreductase subunit B OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=nuoB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.157e-37
Identity = 72/146 (49.32%), Postives = 104/146 (71.23%), Query Frame = -1
Query:    1 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLV-PRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAIKKLRKKISRGG 435
            F   T +++  W +  SLWP  + T+CC IE+ S   + +D  R+G   P  SPRQAD+IL  GT+T KMAP L ++Y+Q+ EPK+VI++GAC  +GGMF T  Y  ++GVD+++PVDVY+PGCPP+PEA++DA+ KL+KK+   G
Sbjct:   18 FQVATLDNVVQWGQSFSLWPYPFATACCGIEYMSTACADYDIARFGAERPSFSPRQADMILVLGTITYKMAPVLRQIYDQLAEPKFVISVGACASSGGMFHT--YGVLQGVDRILPVDVYVPGCPPRPEAILDALVKLQKKVQSQG 161          
BLAST of CX070572 vs. ExPASy Swiss-Prot
Match: NUOB_FRATW (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=nuoB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.157e-37
Identity = 70/143 (48.95%), Postives = 104/143 (72.73%), Query Frame = -1
Query:    7 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAIKKLRKKISR 435
            FI+ +++ L NW R  SLWP+  G +CC +E      +R+D DR+G+V R SPRQ+D+++ AGT+  KMAP+L ++Y+QMP+PK+VI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA++  I +L+ KI R
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNKIIR 151          
BLAST of CX070572 vs. ExPASy Swiss-Prot
Match: NUOB_FRATT (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. tularensis GN=nuoB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.157e-37
Identity = 70/143 (48.95%), Postives = 104/143 (72.73%), Query Frame = -1
Query:    7 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAIKKLRKKISR 435
            FI+ +++ L NW R  SLWP+  G +CC +E      +R+D DR+G+V R SPRQ+D+++ AGT+  KMAP+L ++Y+QMP+PK+VI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA++  I +L+ KI R
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNKIIR 151          
BLAST of CX070572 vs. ExPASy Swiss-Prot
Match: NUOB_FRATO (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=nuoB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.157e-37
Identity = 70/143 (48.95%), Postives = 104/143 (72.73%), Query Frame = -1
Query:    7 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAIKKLRKKISR 435
            FI+ +++ L NW R  SLWP+  G +CC +E      +R+D DR+G+V R SPRQ+D+++ AGT+  KMAP+L ++Y+QMP+PK+VI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA++  I +L+ KI R
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNKIIR 151          
BLAST of CX070572 vs. ExPASy Swiss-Prot
Match: NUOB_FRATN (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. novicida (strain U112) GN=nuoB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.157e-37
Identity = 70/143 (48.95%), Postives = 104/143 (72.73%), Query Frame = -1
Query:    7 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAIKKLRKKISR 435
            FI+ +++ L NW R  SLWP+  G +CC +E      +R+D DR+G+V R SPRQ+D+++ AGT+  KMAP+L ++Y+QMP+PK+VI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA++  I +L+ KI R
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNKIIR 151          
BLAST of CX070572 vs. ExPASy Swiss-Prot
Match: NUOB_FRATM (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=nuoB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.157e-37
Identity = 70/143 (48.95%), Postives = 104/143 (72.73%), Query Frame = -1
Query:    7 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAIKKLRKKISR 435
            FI+ +++ L NW R  SLWP+  G +CC +E      +R+D DR+G+V R SPRQ+D+++ AGT+  KMAP+L ++Y+QMP+PK+VI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA++  I +L+ KI R
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNKIIR 151          
BLAST of CX070572 vs. ExPASy Swiss-Prot
Match: NUOB_FRATH (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. holarctica (strain LVS) GN=nuoB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.157e-37
Identity = 70/143 (48.95%), Postives = 104/143 (72.73%), Query Frame = -1
Query:    7 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAIKKLRKKISR 435
            FI+ +++ L NW R  SLWP+  G +CC +E      +R+D DR+G+V R SPRQ+D+++ AGT+  KMAP+L ++Y+QMP+PK+VI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA++  I +L+ KI R
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNKIIR 151          
BLAST of CX070572 vs. ExPASy Swiss-Prot
Match: NUOB_FRATF (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=nuoB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.157e-37
Identity = 70/143 (48.95%), Postives = 104/143 (72.73%), Query Frame = -1
Query:    7 FISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAIKKLRKKISR 435
            FI+ +++ L NW R  SLWP+  G +CC +E      +R+D DR+G+V R SPRQ+D+++ AGT+  KMAP+L ++Y+QMP+PK+VI+MG+C   GG +   SYS VRG D+++PVD+Y+PGCPP  EA++  I +L+ KI R
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNKIIR 151          
The following BLAST results are available for this feature:
BLAST of CX070572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_NITHX3.157e-3748.28NADH-quinone oxidoreductase subunit B OS=Nitrobact... [more]
NUOB_LEPBP3.157e-3749.32NADH-quinone oxidoreductase subunit B OS=Leptospir... [more]
NUOB_LEPBA3.157e-3749.32NADH-quinone oxidoreductase subunit B OS=Leptospir... [more]
NUOB_FRATW3.157e-3748.95NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_FRATT3.157e-3748.95NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_FRATO3.157e-3748.95NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_FRATN3.157e-3748.95NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_FRATM3.157e-3748.95NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_FRATH3.157e-3748.95NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_FRATF3.157e-3748.95NADH-quinone oxidoreductase subunit B OS=Francisel... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_17F05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17F05-K9-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070572 ID=CX070572; Name=CX070572; organism=Citrus sinensis; type=EST; length=708bp
CCCCCCTCGAGATATTTTCTTACGAAGTTTTTTTATGGCATCTATAACGG
CCTCTGGTTTAGGCGGGCAACCCGGCAAATAAACATCCACGGGAATTAGC
TTATCAACTCCTCGAACAGTACTATACGAATCGGTACTGAACATCCCCCC
TGTAATTGTACATGCTCCCATAGCAATAACATATTTTGGTTCAGGCATTT
GTTCATATAATCTCACTAAAGAAGGAGCCATTTTCATTGTTACTGTACCA
GCTGTTAAAATTAGGTCCGCCTGTCTAGGGCTCGATCTTGGTACCAGCCC
ATAACGGTCAAAATCGAACCGCGAGCCGATTAATGAAGCAAATTCAATGA
AACAACAACTGGTACCATAAAGAAGCGGCCATAAGCTGGAGAGTCTTGAC
CAATTTGAAAGATCGTTTGATGTAGTTGAAATAAATGAATTTGGGGTTGT
TCGATCAAGTAAGGAAAATTCAATAGAATTCATAATTCTCTCAATGTTAT
TTTTTGTTTTTTTTTTTTTTTTTACTTTTTTGTTATTGTCTGAATATTCA
GAAACTAAGACCACTCTAATGCTCCTTTTCGCCACGCATAAACTAAACCA
ACAATTAGGATAAGCATGAAAATGAAAGCTTCTATAAATACGGGTACCCC
CAATACATCAAAACTCATTGCCCATGGATAAAGAAAAACGGTTTCAACAT
CAAAAACA
back to top