CX070572

Overview
NameCX070572
Unique NameCX070572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070572 vs. ExPASy Swiss-Prot
Match: NDHK_STAPU (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Staurastrum punctulatum GN=ndhK PE=3 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 4.982e-75
Identity = 134/162 (82.72%), Postives = 146/162 (90.12%), Query Frame = -1
Query:    7 ERIMNSIEFSLLDRTTPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAIKKLRKKISR 492
            E + N + FS+ +    +S I TT +D +NW RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLI+TAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA+IDA+ KLRKK+ +
Sbjct:   20 ESVTNGLSFSITEENISDSVILTTFHDFTNWIRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVGQ 181          
BLAST of CX070572 vs. ExPASy Swiss-Prot
Match: NDHK_PSINU (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Psilotum nudum GN=ndhK PE=3 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.473e-74
Identity = 133/159 (83.65%), Postives = 145/159 (91.19%), Query Frame = -1
Query:    7 MNSIEFSLLDRTTPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAIKKLRKKISR 483
            +N +E  +    T NS I T  ND SNW+RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLI+TAGTVTMKMAPSL+RLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVD+YLPGCPPKPEA+IDA+ KLRKK+++
Sbjct:    5 INPMESLVSKPNTSNSIILTNLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDIYLPGCPPKPEAIIDAVIKLRKKVAQ 163          
BLAST of CX070572 vs. ExPASy Swiss-Prot
Match: NDHK_CHAGL (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Chaetosphaeridium globosum GN=ndhK PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.229e-74
Identity = 134/162 (82.72%), Postives = 145/162 (89.51%), Query Frame = -1
Query:    7 ERIMNSIEFSLLDRTTPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAIKKLRKKISR 492
            + I N ++ S       NS I TT ND SNW+RLSSLWPLLYGTSCCFIEFA+LIGSRFDFDRYGLVPRSSPRQADLI+TAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVD+YLPGCPPKPEA+IDA+ KLRKK+ +
Sbjct:   19 DSIKNPVKTSSDKEELSNSIILTTLNDFSNWARLSSLWPLLYGTSCCFIEFAALIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDIYLPGCPPKPEAIIDAVIKLRKKVGQ 180          
BLAST of CX070572 vs. ExPASy Swiss-Prot
Match: NDHK_ZYGCR (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Zygnema circumcarinatum GN=ndhK PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 6.090e-73
Identity = 133/160 (83.12%), Postives = 144/160 (90.00%), Query Frame = -1
Query:    7 IMNSIEFSLLDRTTPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAIKKLRKKISR 486
            I N +  S   +   +S + TT  D+SNW RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLI+TAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA++DAI KLRKK+++
Sbjct:    4 ISNPMGLSPTKQNVYDSVVLTTLQDVSNWVRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIVDAIIKLRKKVAQ 163          
BLAST of CX070572 vs. ExPASy Swiss-Prot
Match: NDHK_MESVI (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Mesostigma viride GN=ndhK PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 6.090e-73
Identity = 133/163 (81.60%), Postives = 147/163 (90.18%), Query Frame = -1
Query:    7 ERIMN-SIEFSLLDRTTPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAIKKLRKKISR 492
            ER++N +IE   + +   N  I TT NDL NW+RLSSLWPLLYGTSCCFIEFA L+GSRFDFDR+GLVPR SPRQADLI+TAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA+IDA+ KLRKK+++
Sbjct:   18 ERLINYNIEKPQVTQNVSNQLILTTLNDLYNWARLSSLWPLLYGTSCCFIEFACLLGSRFDFDRFGLVPRCSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVAQ 180          
BLAST of CX070572 vs. ExPASy Swiss-Prot
Match: NDHK_CHLAT (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Chlorokybus atmophyticus GN=ndhK PE=3 SV=2)

HSP 1 Score: 273.478 bits (698), Expect = 7.954e-73
Identity = 130/145 (89.66%), Postives = 139/145 (95.86%), Query Frame = -1
Query:    7 NSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAIKKLRKKISR 441
            N  I TT NDL NW+RLSSLWPLLYGTSCCFIEFASL+GSRFDFDR+GLVPRSSPRQADLI+TAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA+IDA+ KLRKK+++
Sbjct:   62 NQLILTTLNDLYNWARLSSLWPLLYGTSCCFIEFASLLGSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVAQ 206          
BLAST of CX070572 vs. ExPASy Swiss-Prot
Match: NDHK_NEPOL (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Nephroselmis olivacea GN=ndhK PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.314e-72
Identity = 130/156 (83.33%), Postives = 143/156 (91.67%), Query Frame = -1
Query:    7 IEFSLLDRTTPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAIKKLRKKISR 474
            +  S + +   N+ I TT NDL NW+RLSSLWPLLYGTSCCFIEFA LIGSRFDFDR+GLVPRSSPRQADLI+TAGTVTMKMAPSLVRLYEQMP+PKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEA+IDA+ KLRKK+++
Sbjct:   16 VSSSPITQELANNLILTTLNDLYNWARLSSLWPLLYGTSCCFIEFACLIGSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPDPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVAQ 171          
BLAST of CX070572 vs. ExPASy Swiss-Prot
Match: NDHK_CHAVU (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Chara vulgaris GN=ndhK PE=3 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.314e-72
Identity = 132/160 (82.50%), Postives = 145/160 (90.62%), Query Frame = -1
Query:    7 IMNSIEFSLLDRTTPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAIKKLRKKISR 486
            ++NS E    ++    S I TT NDL+NW+RLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLI+TAGTVTMKMAPSLVRLYEQM EPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV+VYLPGCPPKPEA+ID + KLRK+I++
Sbjct:   23 LINSTERLTTNQILSTSVILTTMNDLTNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMAEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVNVYLPGCPPKPEAIIDGVIKLRKQIAQ 182          
BLAST of CX070572 vs. ExPASy Swiss-Prot
Match: NDHK_ADICA (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Adiantum capillus-veneris GN=ndhK PE=2 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 3.948e-72
Identity = 130/158 (82.28%), Postives = 142/158 (89.87%), Query Frame = -1
Query:    7 NSIEFSLLDRTTPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAIKKLRKKISR 480
            NS+    L     +S    + +D SNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLI+TAGT+TMKMAPSL+RLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVD+YLPGCPPKPEA++DA+ KLRKKI+R
Sbjct:   26 NSMSKLPLQGGMSDSIFMASISDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIVTAGTITMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDIYLPGCPPKPEAIMDAVTKLRKKIAR 183          
BLAST of CX070572 vs. ExPASy Swiss-Prot
Match: NDHK1_GLOVI (NAD(P)H-quinone oxidoreductase subunit K 1 OS=Gloeobacter violaceus GN=ndhK1 PE=3 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.166e-70
Identity = 125/162 (77.16%), Postives = 144/162 (88.89%), Query Frame = -1
Query:   10 IERIMNSIEFSLLDRTTPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAIKKLRKKIS 495
            I+ ++N IE   +     N+ + TT NDL NW+RLSS+WPL+YGTSCCFIEFA LIGSRFDFDR+GLVPR+SPRQADLI+TAGTVTMKMAP+LV LYEQMPEPKYVIAMGACTITGGMFSTDSY+TVRGVDKLIPVDVY+PGCPP+PEA+ DAI KLRKK++
Sbjct:    3 IKNLLNPIERPEVTSELTNNVVLTTLNDLYNWARLSSVWPLMYGTSCCFIEFAGLIGSRFDFDRFGLVPRASPRQADLIITAGTVTMKMAPALVTLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGVDKLIPVDVYIPGCPPRPEAIFDAIVKLRKKMA 164          
The following BLAST results are available for this feature:
BLAST of CX070572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDHK_STAPU4.982e-7582.72NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_PSINU2.473e-7483.65NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_CHAGL3.229e-7482.72NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_ZYGCR6.090e-7383.13NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_MESVI6.090e-7381.60NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_CHLAT7.954e-7389.66NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_NEPOL2.314e-7283.33NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_CHAVU2.314e-7282.50NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_ADICA3.948e-7282.28NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK1_GLOVI2.166e-7077.16NAD(P)H-quinone oxidoreductase subunit K 1 OS=Gloe... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17F05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17F05-K9-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070572 ID=CX070572; Name=CX070572; organism=Citrus sinensis; type=EST; length=708bp
CCCCCCTCGAGATATTTTCTTACGAAGTTTTTTTATGGCATCTATAACGG
CCTCTGGTTTAGGCGGGCAACCCGGCAAATAAACATCCACGGGAATTAGC
TTATCAACTCCTCGAACAGTACTATACGAATCGGTACTGAACATCCCCCC
TGTAATTGTACATGCTCCCATAGCAATAACATATTTTGGTTCAGGCATTT
GTTCATATAATCTCACTAAAGAAGGAGCCATTTTCATTGTTACTGTACCA
GCTGTTAAAATTAGGTCCGCCTGTCTAGGGCTCGATCTTGGTACCAGCCC
ATAACGGTCAAAATCGAACCGCGAGCCGATTAATGAAGCAAATTCAATGA
AACAACAACTGGTACCATAAAGAAGCGGCCATAAGCTGGAGAGTCTTGAC
CAATTTGAAAGATCGTTTGATGTAGTTGAAATAAATGAATTTGGGGTTGT
TCGATCAAGTAAGGAAAATTCAATAGAATTCATAATTCTCTCAATGTTAT
TTTTTGTTTTTTTTTTTTTTTTTACTTTTTTGTTATTGTCTGAATATTCA
GAAACTAAGACCACTCTAATGCTCCTTTTCGCCACGCATAAACTAAACCA
ACAATTAGGATAAGCATGAAAATGAAAGCTTCTATAAATACGGGTACCCC
CAATACATCAAAACTCATTGCCCATGGATAAAGAAAAACGGTTTCAACAT
CAAAAACA
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