CX070535

Overview
NameCX070535
Unique NameCX070535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A_NEUCR (Histone H2A OS=Neurospora crassa GN=hh2a PE=3 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.664e-23
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = -3 
Query:  106 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK-GKGDIGSASQE 324
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK GK GK    +ASQE
Sbjct:   64 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGKTGK----NASQE 133
[Close]
BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A_ASPTN (Histone H2A OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=hta1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.664e-23
Identity = 52/65 (80.00%), Postives = 58/65 (89.23%), Query Frame = -3 
Query:  130 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKG 324
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  K KG
Sbjct:   63 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKAKG 127
[Close]
BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A_PODAN (Histone H2A OS=Podospora anserina GN=HTA1 PE=3 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 2.174e-23
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = -3 
Query:  106 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 324
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK G   G   +ASQE
Sbjct:   64 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGTKPGK--NASQE 134
[Close]
BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A2_CANAL (Histone H2A.2 OS=Candida albicans GN=HTA2 PE=3 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 2.839e-23
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = -3 
Query:  106 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 324
            ++LELAGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ+LLP K  K     G+ASQE
Sbjct:   62 EILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQSLLPAKKAKA----GAASQE 130
[Close]
BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A_KLULA (Histone H2A OS=Kluyveromyces lactis GN=HTA1 PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 3.708e-23
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = -3 
Query:  106 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 324
            ++LELAGNAARDNKK RI+PRH+QLA+RND+EL+KLLG+VTIA GGVLPNIHQ LLPKK  K K     ASQE
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSSKAK-----ASQE 129
[Close]
BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A_GIBZE (Histone H2A OS=Gibberella zeae GN=HTA1 PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 3.708e-23
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = -3 
Query:  139 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 324
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK GK
Sbjct:   64 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGK 125
[Close]
BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A_CHAGB (Histone H2A OS=Chaetomium globosum GN=HTA1 PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.708e-23
Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = -3 
Query:  139 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 324
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK GK
Sbjct:   64 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGK 125
[Close]
BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSJ (Probable histone H2A.3 OS=Oryza sativa subsp. japonica GN=Os08g0427700 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.708e-23
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = -3 
Query:  142 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 324
            +VLELAGNAARDNKK RIVPRHIQLAVRNDEELS+LLG+VTIANGGV+PNIH  LLPKK G
Sbjct:   63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAG 123
[Close]
BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSI (Probable histone H2A.3 OS=Oryza sativa subsp. indica GN=OsI_028288 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.708e-23
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = -3 
Query:  142 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 324
            +VLELAGNAARDNKK RIVPRHIQLAVRNDEELS+LLG+VTIANGGV+PNIH  LLPKK G
Sbjct:   63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAG 123
[Close]
BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A2_DEBHA (Histone H2A.2 OS=Debaryomyces hansenii GN=HTA2 PE=3 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 3.708e-23
Identity = 54/73 (73.97%), Postives = 63/73 (86.30%), Query Frame = -3 
Query:  106 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 324
            ++LELAGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ+LLP K  K     G+ASQE
Sbjct:   62 EILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLLPAKKAKA----GNASQE 130
The following BLAST results are available for this feature:
BLAST of CX070535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
H2A_NEUCR1.664e-2377.03Histone H2A OS=Neurospora crassa GN=hh2a PE=3 SV=3[more]
H2A_ASPTN1.664e-2380.00Histone H2A OS=Aspergillus terreus (strain NIH 262... [more]
H2A_PODAN2.174e-2375.34Histone H2A OS=Podospora anserina GN=HTA1 PE=3 SV=... [more]
H2A2_CANAL2.839e-2373.97Histone H2A.2 OS=Candida albicans GN=HTA2 PE=3 SV=... [more]
H2A_KLULA3.708e-2373.97Histone H2A OS=Kluyveromyces lactis GN=HTA1 PE=3 S... [more]
H2A_GIBZE3.708e-2382.26Histone H2A OS=Gibberella zeae GN=HTA1 PE=3 SV=3[more]
H2A_CHAGB3.708e-2382.26Histone H2A OS=Chaetomium globosum GN=HTA1 PE=3 SV... [more]
H2A3_ORYSJ3.708e-2386.89Probable histone H2A.3 OS=Oryza sativa subsp. japo... [more]
H2A3_ORYSI3.708e-2386.89Probable histone H2A.3 OS=Oryza sativa subsp. indi... [more]
H2A2_DEBHA3.708e-2373.97Histone H2A.2 OS=Debaryomyces hansenii GN=HTA2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17D04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17D04-G7-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070535 ID=CX070535; Name=CX070535; organism=Citrus sinensis; type=EST; length=884bp
TAGCAAATGCAATCTCTGTTACCATAAGAAAAAAACTCATAACCATTTTT
CTTTTTGTCCTTTTTTACAGATACTAGTAAAATTCTGACAGAGCAGAGTC
TAGAACTCTTGAGAAGCAGAACCAATGTCACCCTTTCCTTTCCCCATCTT
CTTGGGAAGCAGCGTCTGGTGAATGTTGGGTAAAACACCTCCATTGGCAA
TGGTAACCGAGCCCAGCAGCTTGCTCAATTCCTCATCATTTCGAACTGCA
AGCTGAATATGCCTTGGCACTATACGGTTCTTCTTGTTGTCCCTTGCTGC
ATTGCCAGCAAGCTCCAGAACCTGTAGATTGAAACACATAAAATCATTTC
CCATATTACAAGGCTGGAAAAATCACAATCTTGAACCATTTAATCAGTTT
CAAGAAACAATTTTTGAAGTATCAATAAGCAAACAGCTTTAATTCTTCTT
CACCATCAGTGCTTAAGAATCAATTAATCTAATTATATAATCCCAGTTCT
ATTTGTTTTGATGAAGAAATGTTTAAGACCCACTTAAAAAATAAAAAAAT
ATTAATCAATTTCCAAGAAACAATTTTGAAAAAAAAACTGACATTTGAAG
TATCAACAAGTAAACAGCCGTACTTAAGAATAAAATAATCCAAAAAAACA
TAATTTCTGTTGTATTTGTTTTCATGAAGAAATGATTAAGACACCTTTAA
AAAATAAAAAATTTACCACTGAGAAGCAAATTTCACAAATTCAAAGTTCA
ATTCAATCAAACCCTAATTTCATTATCAGGCAATAATAAAACAAACAAAC
AAACCTCAGCAGCGAGGTACTCAAGCACGGCAGAGAGGTAAACAGGAGCT
CCGGCGCCGACTCGCTCAGCGTACTTTCCGGCCT
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