CX070535 | Citrus Genome Database

Overview


Name	CX070535
Unique Name	CX070535
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	884

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A_NEOFI (Histone H2A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=hta1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.260e-23
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = -3

Query:  130 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK-GKG 324
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  K GKG
Sbjct:   63 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKG 128

[Close]

BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A_EMENI (Histone H2A OS=Emericella nidulans GN=htaA PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 8.260e-23
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = -3

Query:  130 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK-GKG 324
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  K GKG
Sbjct:   63 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKAGKG 128

[Close]

BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A_ASPOR (Histone H2A OS=Aspergillus oryzae GN=hta1 PE=3 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 8.260e-23
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = -3

Query:  130 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK-GKG 324
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  K GKG
Sbjct:   63 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKG 128

[Close]

BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A_ASPNG (Histone H2A OS=Aspergillus niger GN=httA PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.260e-23
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = -3

Query:  130 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK-GKG 324
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  K GKG
Sbjct:   63 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKG 128

[Close]

BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A_ASPNC (Histone H2A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=httA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.260e-23
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = -3

Query:  130 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK-GKG 324
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  K GKG
Sbjct:   63 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKG 128

[Close]

BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A_ASPFU (Histone H2A OS=Aspergillus fumigatus GN=hta1 PE=3 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 8.260e-23
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = -3

Query:  130 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK-GKG 324
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  K GKG
Sbjct:   63 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKG 128

[Close]

BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A_ASPCL (Histone H2A OS=Aspergillus clavatus GN=hta1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.260e-23
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = -3

Query:  130 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK-GKG 324
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK  K GKG
Sbjct:   63 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKSGKG 128

[Close]

BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A2_PICST (Histone H2A.2 OS=Pichia stipitis GN=HTA2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.260e-23
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = -3

Query:  106 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 324
            ++LELAGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ+LLP K  K     G ASQE
Sbjct:   62 EILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLLPAKKAKP----GKASQE 130

[Close]

BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 1.079e-22
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = -3

Query:  133 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 324
            +VLELAGNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA+GGV+PNIH  LLPKK G  K
Sbjct:   63 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGMVTIASGGVMPNIHNLLLPKKAGGSK 126

[Close]

BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A2_YEAST (Histone H2A.2 OS=Saccharomyces cerevisiae GN=HTA2 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.409e-22
Identity = 53/73 (72.60%), Postives = 61/73 (83.56%), Query Frame = -3

Query:  106 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 324
            ++LELAGNAARDNKK RI+PRH+QLA+RND+EL+KLLG+VTIA GGVLPNIHQ LLPKK  K       ASQE
Sbjct:   63 EILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAK----TAKASQE 131

The following BLAST results are available for this feature:

BLAST of CX070535 vs. ExPASy Swiss-Prot

BLAST of CX070535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231


Match Name	E-value	Identity	Description
H2A_NEOFI	8.260e-23	80.30	Histone H2A OS=Neosartorya fischeri (strain ATCC 1...	[more]
H2A_EMENI	8.260e-23	80.30	Histone H2A OS=Emericella nidulans GN=htaA PE=3 SV...	[more]
H2A_ASPOR	8.260e-23	80.30	Histone H2A OS=Aspergillus oryzae GN=hta1 PE=3 SV=...	[more]
H2A_ASPNG	8.260e-23	80.30	Histone H2A OS=Aspergillus niger GN=httA PE=2 SV=1	[more]
H2A_ASPNC	8.260e-23	80.30	Histone H2A OS=Aspergillus niger (strain CBS 513.8...	[more]
H2A_ASPFU	8.260e-23	80.30	Histone H2A OS=Aspergillus fumigatus GN=hta1 PE=3 ...	[more]
H2A_ASPCL	8.260e-23	80.30	Histone H2A OS=Aspergillus clavatus GN=hta1 PE=3 S...	[more]
H2A2_PICST	8.260e-23	73.97	Histone H2A.2 OS=Pichia stipitis GN=HTA2 PE=3 SV=1	[more]
H2A7_WHEAT	1.079e-22	82.81	Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 S...	[more]
H2A2_YEAST	1.409e-22	72.60	Histone H2A.2 OS=Saccharomyces cerevisiae GN=HTA2 ...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_17D04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17D04-G7-1-4.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX070535 ID=CX070535; Name=CX070535; organism=Citrus sinensis; type=EST; length=884bp
TAGCAAATGCAATCTCTGTTACCATAAGAAAAAAACTCATAACCATTTTT
CTTTTTGTCCTTTTTTACAGATACTAGTAAAATTCTGACAGAGCAGAGTC
TAGAACTCTTGAGAAGCAGAACCAATGTCACCCTTTCCTTTCCCCATCTT
CTTGGGAAGCAGCGTCTGGTGAATGTTGGGTAAAACACCTCCATTGGCAA
TGGTAACCGAGCCCAGCAGCTTGCTCAATTCCTCATCATTTCGAACTGCA
AGCTGAATATGCCTTGGCACTATACGGTTCTTCTTGTTGTCCCTTGCTGC
ATTGCCAGCAAGCTCCAGAACCTGTAGATTGAAACACATAAAATCATTTC
CCATATTACAAGGCTGGAAAAATCACAATCTTGAACCATTTAATCAGTTT
CAAGAAACAATTTTTGAAGTATCAATAAGCAAACAGCTTTAATTCTTCTT
CACCATCAGTGCTTAAGAATCAATTAATCTAATTATATAATCCCAGTTCT
ATTTGTTTTGATGAAGAAATGTTTAAGACCCACTTAAAAAATAAAAAAAT
ATTAATCAATTTCCAAGAAACAATTTTGAAAAAAAAACTGACATTTGAAG
TATCAACAAGTAAACAGCCGTACTTAAGAATAAAATAATCCAAAAAAACA
TAATTTCTGTTGTATTTGTTTTCATGAAGAAATGATTAAGACACCTTTAA
AAAATAAAAAATTTACCACTGAGAAGCAAATTTCACAAATTCAAAGTTCA
ATTCAATCAAACCCTAATTTCATTATCAGGCAATAATAAAACAAACAAAC
AAACCTCAGCAGCGAGGTACTCAAGCACGGCAGAGAGGTAAACAGGAGCT
CCGGCGCCGACTCGCTCAGCGTACTTTCCGGCCT