CX070535 | Citrus Genome Database

Overview


Name	CX070535
Unique Name	CX070535
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	884

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A2_PSAMI (Late histone H2A.2.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.992e-22
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = -3

Query:  139 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 324
            ++LELAGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK GK
Sbjct:   61 EILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQTVLLPKKTGK 122

[Close]

BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A2_ASHGO (Histone H2A.2 OS=Ashbya gossypii GN=HTA2 PE=3 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 6.992e-22
Identity = 52/73 (71.23%), Postives = 60/73 (82.19%), Query Frame = -3

Query:  106 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 324
            ++LELAGNAARDNKK RI+PRH+QLA+RND+EL+KLLG+VTIA GGVLPNIH  LLPKK  K       ASQE
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHANLLPKKSAKAT----KASQE 130

[Close]

BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A1_ASHGO (Histone H2A.1 OS=Ashbya gossypii GN=HTA1 PE=3 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 6.992e-22
Identity = 52/73 (71.23%), Postives = 60/73 (82.19%), Query Frame = -3

Query:  106 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 324
            ++LELAGNAARDNKK RI+PRH+QLA+RND+EL+KLLG+VTIA GGVLPNIH  LLPKK  K       ASQE
Sbjct:   62 EILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHANLLPKKSAKAT----KASQE 130

[Close]

BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2AX_XENLA (Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 9.132e-22
Identity = 51/73 (69.86%), Postives = 58/73 (79.45%), Query Frame = -3

Query:  106 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 324
            ++LELAGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK   G    G  S +
Sbjct:   62 EILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKSSGGVSTSGKKSSQ 134

[Close]

BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A1_PSAMI (Late histone H2A.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.034e-21
Identity = 53/83 (63.86%), Postives = 61/83 (73.49%), Query Frame = -3

Query:  139 GSRL*FFQPCNMGNDFMCFNLQVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 387
            GSR+    P  +         ++LELAGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK  K
Sbjct:   40 GSRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122

[Close]

BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A_STRPU (Histone H2A, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.470e-21
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = -3

Query:  139 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 324
            ++LELAGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK  K
Sbjct:   61 EILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122

[Close]

BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2AE_PSAMI (Histone H2A, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.470e-21
Identity = 49/62 (79.03%), Postives = 55/62 (88.71%), Query Frame = -3

Query:  139 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 324
            ++LELAGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK  K
Sbjct:   61 EILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122

[Close]

BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.532e-21
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = -3

Query:  142 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 324
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK G
Sbjct:   61 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTG 121

[Close]

BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A_COCIM (Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.532e-21
Identity = 48/62 (77.42%), Postives = 55/62 (88.71%), Query Frame = -3

Query:  139 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 324
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGV+P IHQ LLPKK  K
Sbjct:   63 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVMPYIHQNLLPKKTPK 124

[Close]

BLAST of CX070535 vs. ExPASy Swiss-Prot
Match: H2A3_PSAMI (Late histone H2A.3, gonadal OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.532e-21
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = -3

Query:  142 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 324
            ++LELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK G
Sbjct:   61 EILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTG 121

The following BLAST results are available for this feature:

BLAST of CX070535 vs. ExPASy Swiss-Prot

BLAST of CX070535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231


Match Name	E-value	Identity	Description
H2A2_PSAMI	6.992e-22	80.65	Late histone H2A.2.1 OS=Psammechinus miliaris PE=2...	[more]
H2A2_ASHGO	6.992e-22	71.23	Histone H2A.2 OS=Ashbya gossypii GN=HTA2 PE=3 SV=3	[more]
H2A1_ASHGO	6.992e-22	71.23	Histone H2A.1 OS=Ashbya gossypii GN=HTA1 PE=3 SV=3	[more]
H2AX_XENLA	9.132e-22	69.86	Histone H2A.x OS=Xenopus laevis GN=h2afx PE=1 SV=3	[more]
H2A1_PSAMI	2.034e-21	63.86	Late histone H2A.1 OS=Psammechinus miliaris PE=2 S...	[more]
H2A_STRPU	3.470e-21	79.03	Histone H2A, embryonic OS=Strongylocentrotus purpu...	[more]
H2AE_PSAMI	3.470e-21	79.03	Histone H2A, embryonic OS=Psammechinus miliaris PE...	[more]
H2A_PARAN	4.532e-21	78.69	Histone H2A, gonadal OS=Parechinus angulosus PE=1 ...	[more]
H2A_COCIM	4.532e-21	77.42	Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 S...	[more]
H2A3_PSAMI	4.532e-21	78.69	Late histone H2A.3, gonadal OS=Psammechinus miliar...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS08_17D04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17D04-G7-1-4.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX070535 ID=CX070535; Name=CX070535; organism=Citrus sinensis; type=EST; length=884bp
TAGCAAATGCAATCTCTGTTACCATAAGAAAAAAACTCATAACCATTTTT
CTTTTTGTCCTTTTTTACAGATACTAGTAAAATTCTGACAGAGCAGAGTC
TAGAACTCTTGAGAAGCAGAACCAATGTCACCCTTTCCTTTCCCCATCTT
CTTGGGAAGCAGCGTCTGGTGAATGTTGGGTAAAACACCTCCATTGGCAA
TGGTAACCGAGCCCAGCAGCTTGCTCAATTCCTCATCATTTCGAACTGCA
AGCTGAATATGCCTTGGCACTATACGGTTCTTCTTGTTGTCCCTTGCTGC
ATTGCCAGCAAGCTCCAGAACCTGTAGATTGAAACACATAAAATCATTTC
CCATATTACAAGGCTGGAAAAATCACAATCTTGAACCATTTAATCAGTTT
CAAGAAACAATTTTTGAAGTATCAATAAGCAAACAGCTTTAATTCTTCTT
CACCATCAGTGCTTAAGAATCAATTAATCTAATTATATAATCCCAGTTCT
ATTTGTTTTGATGAAGAAATGTTTAAGACCCACTTAAAAAATAAAAAAAT
ATTAATCAATTTCCAAGAAACAATTTTGAAAAAAAAACTGACATTTGAAG
TATCAACAAGTAAACAGCCGTACTTAAGAATAAAATAATCCAAAAAAACA
TAATTTCTGTTGTATTTGTTTTCATGAAGAAATGATTAAGACACCTTTAA
AAAATAAAAAATTTACCACTGAGAAGCAAATTTCACAAATTCAAAGTTCA
ATTCAATCAAACCCTAATTTCATTATCAGGCAATAATAAAACAAACAAAC
AAACCTCAGCAGCGAGGTACTCAAGCACGGCAGAGAGGTAAACAGGAGCT
CCGGCGCCGACTCGCTCAGCGTACTTTCCGGCCT