CX070530

Overview
NameCX070530
Unique NameCX070530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070530 vs. ExPASy Swiss-Prot
Match: H2B1_ORYSI (Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI_010709 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.257e-42
Identity = 86/92 (93.48%), Postives = 91/92 (98.91%), Query Frame = 3
Query:  219 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 494
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQE++RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   61 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSN 152          
BLAST of CX070530 vs. ExPASy Swiss-Prot
Match: H2B_TOBAC (Histone H2B OS=Nicotiana tabacum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 5.560e-42
Identity = 88/102 (86.27%), Postives = 92/102 (90.20%), Query Frame = 3
Query:  189 GDXXXXXXXXSIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 494
            GD        S+ETYKIYIF+VLK VHPDIGISSKAMGIMNSFINDIFEKLA+ESSRLA YNKKPTI+SREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   45 GDKKKKRAEMSVETYKIYIFRVLKHVHPDIGISSKAMGIMNSFINDIFEKLARESSRLAGYNKKPTISSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 146          
BLAST of CX070530 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSJ (Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.560e-42
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 3
Query:  219 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 494
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
BLAST of CX070530 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSI (Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.560e-42
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 3
Query:  219 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 494
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
BLAST of CX070530 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSI (Histone H2B.6 OS=Oryza sativa subsp. indica GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.560e-42
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 3
Query:  219 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 494
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
BLAST of CX070530 vs. ExPASy Swiss-Prot
Match: H2B5_WHEAT (Histone H2B.5 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 5.560e-42
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 3
Query:  219 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 494
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   45 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 136          
BLAST of CX070530 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSJ (Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.484e-42
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 3
Query:  219 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 494
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
BLAST of CX070530 vs. ExPASy Swiss-Prot
Match: H2B1_MAIZE (Histone H2B.1 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 9.484e-42
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 3
Query:  219 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 494
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   60 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 151          
BLAST of CX070530 vs. ExPASy Swiss-Prot
Match: H2B3_MAIZE (Histone H2B.3 OS=Zea mays PE=3 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 1.239e-41
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = 3
Query:  219 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 494
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA ES++LARYNKKPT+TSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   62 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTVTSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
BLAST of CX070530 vs. ExPASy Swiss-Prot
Match: H2B5_MAIZE (Histone H2B.5 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 2.113e-41
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = 3
Query:  219 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 494
            S+ETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   63 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 154          
The following BLAST results are available for this feature:
BLAST of CX070530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B1_ORYSI4.257e-4293.48Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI... [more]
H2B_TOBAC5.560e-4286.27Histone H2B OS=Nicotiana tabacum GN=HIS2B PE=2 SV=... [more]
H2B8_ORYSJ5.560e-4294.57Histone H2B.8 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B8_ORYSI5.560e-4294.57Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B6_ORYSI5.560e-4294.57Histone H2B.6 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B5_WHEAT5.560e-4294.57Histone H2B.5 OS=Triticum aestivum PE=1 SV=3[more]
H2B6_ORYSJ9.484e-4293.48Histone H2B.6 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B1_MAIZE9.484e-4293.48Histone H2B.1 OS=Zea mays PE=2 SV=3[more]
H2B3_MAIZE1.239e-4192.39Histone H2B.3 OS=Zea mays PE=3 SV=3[more]
H2B5_MAIZE2.113e-4192.39Histone H2B.5 OS=Zea mays PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17D01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17D01-G1-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070530 ID=CX070530; Name=CX070530; organism=Citrus sinensis; type=EST; length=710bp
CCCGTATTCACCGAATCTAACAATTTGTCTTCTACTTTCAATTCCTCGCG
AACCCACAGTTTCTTCTGACGATGGCACCAAAGGCGGAGAAGAAGCCAGC
GGAGGAGAAGAAGACACCGGTAGCGGAGAAGGCGCCTGCCGAGAAGAAGC
CGAAGGCCGGGAAGAAACTTCCGAAGGAAGCCGCAGCGGGTGACAAGAAG
AAGAAGCGCACGAAGAAGAGCATTGAGACGTACAAGATCTACATATTCAA
AGTCCTGAAGCAAGTCCATCCAGATATCGGAATCTCGAGCAAGGCTATGG
GAATTATGAACAGTTTCATCAACGATATTTTCGAGAAGCTTGCTCAGGAA
TCTTCCAGGCTGGCAAGGTACAACAAGAAGCCGACGATAACTTCTCGTGA
AATCCAGACCGCTGTGAGACTTGTGCTTCCTGGTGAGCTGGCTAAGCACG
CCGTTTCTGAGGGTACCAAGGCGGTTACCAAGTTCACCTCGTCTTAAATT
AGGGTTAGGTTTCACTATGTGCGATGAAATTGGGGTTAGTGATGTTTGCT
GTGTCCTTTCTTGGAGTAATAATGTAAGTAGTTAGTATTAATGAAATGGC
ATGGTGCTGATAGAAGTGACTTATATTGCCTTATTATGTTCGATCAATGT
GTTGATATCGGATTTTAGCAACTGGTTTTATAAGATATGGTCTTAAATAT
TATGAAAAAA
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