CX070530

Overview
NameCX070530
Unique NameCX070530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX070530 vs. ExPASy Swiss-Prot
Match: H2B1N_HUMAN (Histone H2B type 1-N OS=Homo sapiens GN=HIST1H2BN PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 9.186e-37
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  225 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 494
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX070530 vs. ExPASy Swiss-Prot
Match: H2B1M_MOUSE (Histone H2B type 1-M OS=Mus musculus GN=Hist1h2bm PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 9.186e-37
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  225 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 494
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX070530 vs. ExPASy Swiss-Prot
Match: H2B1M_HUMAN (Histone H2B type 1-M OS=Homo sapiens GN=HIST1H2BM PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 9.186e-37
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  225 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 494
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX070530 vs. ExPASy Swiss-Prot
Match: H2B1H_MOUSE (Histone H2B type 1-H OS=Mus musculus GN=Hist1h2bh PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 9.186e-37
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  225 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 494
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX070530 vs. ExPASy Swiss-Prot
Match: H2B1H_HUMAN (Histone H2B type 1-H OS=Homo sapiens GN=HIST1H2BH PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 9.186e-37
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  225 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 494
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX070530 vs. ExPASy Swiss-Prot
Match: H2B1D_HUMAN (Histone H2B type 1-D OS=Homo sapiens GN=HIST1H2BD PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 9.186e-37
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  225 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 494
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX070530 vs. ExPASy Swiss-Prot
Match: H2B1C_MOUSE (Histone H2B type 1-C/E/G OS=Mus musculus GN=Hist1h2bc PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 9.186e-37
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  225 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 494
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX070530 vs. ExPASy Swiss-Prot
Match: H2B1K_MOUSE (Histone H2B type 1-K OS=Mus musculus GN=Hist1h2bk PE=1 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 1.200e-36
Identity = 73/90 (81.11%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  225 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 494
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CX070530 vs. ExPASy Swiss-Prot
Match: H2B_CHITH (Histone H2B OS=Chironomus thummi thummi PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.567e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  225 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 494
            E+Y IYIFKVLKQVHPD G+SSKAM IMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   35 ESYAIYIFKVLKQVHPDTGVSSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 124
[Close]
BLAST of CX070530 vs. ExPASy Swiss-Prot
Match: H2B1J_HUMAN (Histone H2B type 1-J OS=Homo sapiens GN=HIST1H2BJ PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 1.567e-36
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  225 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 494
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
The following BLAST results are available for this feature:
BLAST of CX070530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B1N_HUMAN9.186e-3782.22Histone H2B type 1-N OS=Homo sapiens GN=HIST1H2BN ... [more]
H2B1M_MOUSE9.186e-3782.22Histone H2B type 1-M OS=Mus musculus GN=Hist1h2bm ... [more]
H2B1M_HUMAN9.186e-3782.22Histone H2B type 1-M OS=Homo sapiens GN=HIST1H2BM ... [more]
H2B1H_MOUSE9.186e-3782.22Histone H2B type 1-H OS=Mus musculus GN=Hist1h2bh ... [more]
H2B1H_HUMAN9.186e-3782.22Histone H2B type 1-H OS=Homo sapiens GN=HIST1H2BH ... [more]
H2B1D_HUMAN9.186e-3782.22Histone H2B type 1-D OS=Homo sapiens GN=HIST1H2BD ... [more]
H2B1C_MOUSE9.186e-3782.22Histone H2B type 1-C/E/G OS=Mus musculus GN=Hist1h... [more]
H2B1K_MOUSE1.200e-3681.11Histone H2B type 1-K OS=Mus musculus GN=Hist1h2bk ... [more]
H2B_CHITH1.567e-3683.33Histone H2B OS=Chironomus thummi thummi PE=3 SV=2[more]
H2B1J_HUMAN1.567e-3682.22Histone H2B type 1-J OS=Homo sapiens GN=HIST1H2BJ ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17D01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17D01-G1-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070530 ID=CX070530; Name=CX070530; organism=Citrus sinensis; type=EST; length=710bp
CCCGTATTCACCGAATCTAACAATTTGTCTTCTACTTTCAATTCCTCGCG
AACCCACAGTTTCTTCTGACGATGGCACCAAAGGCGGAGAAGAAGCCAGC
GGAGGAGAAGAAGACACCGGTAGCGGAGAAGGCGCCTGCCGAGAAGAAGC
CGAAGGCCGGGAAGAAACTTCCGAAGGAAGCCGCAGCGGGTGACAAGAAG
AAGAAGCGCACGAAGAAGAGCATTGAGACGTACAAGATCTACATATTCAA
AGTCCTGAAGCAAGTCCATCCAGATATCGGAATCTCGAGCAAGGCTATGG
GAATTATGAACAGTTTCATCAACGATATTTTCGAGAAGCTTGCTCAGGAA
TCTTCCAGGCTGGCAAGGTACAACAAGAAGCCGACGATAACTTCTCGTGA
AATCCAGACCGCTGTGAGACTTGTGCTTCCTGGTGAGCTGGCTAAGCACG
CCGTTTCTGAGGGTACCAAGGCGGTTACCAAGTTCACCTCGTCTTAAATT
AGGGTTAGGTTTCACTATGTGCGATGAAATTGGGGTTAGTGATGTTTGCT
GTGTCCTTTCTTGGAGTAATAATGTAAGTAGTTAGTATTAATGAAATGGC
ATGGTGCTGATAGAAGTGACTTATATTGCCTTATTATGTTCGATCAATGT
GTTGATATCGGATTTTAGCAACTGGTTTTATAAGATATGGTCTTAAATAT
TATGAAAAAA
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