CX070525

Overview
NameCX070525
Unique NameCX070525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070525 vs. ExPASy Swiss-Prot
Match: PORA_WHEAT (Protochlorophyllide reductase A, chloroplastic OS=Triticum aestivum GN=PORA PE=3 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 2.013e-92
Identity = 164/202 (81.19%), Postives = 184/202 (91.09%), Query Frame = -1
Query:  230 GHFXXXXXXXXXLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGD-FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 832
            GHF         L++SDYPS+R++IVGSITGN+NTLAGNVPPKA+LGDLRG AGGL+G + S+MIDG + FDGAKAYKDSKVCNMLTMQEFHRR+HEETGI F+SLYPGCIATTGLFREHIPLFR LFPPFQK++TKG+VSE E+GKRLAQVV++PSLTKSGVYWSWNKDSASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct:  187 GHFLLARLLMEDLQKSDYPSRRMVIVGSITGNSNTLAGNVPPKASLGDLRGLAGGLSGASGSAMIDGDESFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFSSLYPGCIATTGLFREHIPLFRTLFPPFQKFVTKGFVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 388          
BLAST of CX070525 vs. ExPASy Swiss-Prot
Match: PORA_HORVU (Protochlorophyllide reductase A, chloroplastic OS=Hordeum vulgare GN=PORA PE=1 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 9.992e-92
Identity = 163/202 (80.69%), Postives = 183/202 (90.59%), Query Frame = -1
Query:  230 GHFXXXXXXXXXLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGD-FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 832
            GHF         L++SDYPS+R++IVGSITGN+NTLAGNVPPKA+LGDLRG AGGL+G + S+MIDG + FDGAKAYKDSKVCNMLTMQEFHRR+HEETGI F+SLYPGCIATTGLFREHIPLFR LFPPFQK++TKG+VSE E+GKRLAQVV++P LTKSGVYWSWNKDSASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct:  187 GHFLLARLLMEDLQKSDYPSRRMVIVGSITGNSNTLAGNVPPKASLGDLRGLAGGLSGASGSAMIDGDESFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFSSLYPGCIATTGLFREHIPLFRTLFPPFQKFVTKGFVSEAESGKRLAQVVAEPVLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 388          
BLAST of CX070525 vs. ExPASy Swiss-Prot
Match: POR_MARPA (Protochlorophyllide reductase, chloroplastic OS=Marchantia paleacea GN=PORA PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.651e-86
Identity = 152/200 (76.00%), Postives = 174/200 (87.00%), Query Frame = -1
Query:  233 GHFXXXXXXXXXLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGL 832
            GHF         L+++    KR+IIVGSITGN+NT+AGNVPPKANLG LRG AGGLNG+NSSSMIDGG+FDGAKAYKDSKVCNM TMQEFHRR+H ETGI F+SLYPGCIA TGLFR H+ LFR LFPPFQKYITKGYVSE+EAGKR+AQVVSDP L+KSGVYWSWNKDS SFEN+LS+EAS+ EKA+++WE+SE+L GL
Sbjct:  258 GHFLLARLLMEDLQKAKDSLKRMIIVGSITGNSNTVAGNVPPKANLGHLRGLAGGLNGVNSSSMIDGGEFDGAKAYKDSKVCNMFTMQEFHRRYHAETGITFSSLYPGCIAETGLFRNHVTLFRTLFPPFQKYITKGYVSEEEAGKRMAQVVSDPKLSKSGVYWSWNKDSGSFENELSEEASNPEKAKRLWELSERLSGL 457          
BLAST of CX070525 vs. ExPASy Swiss-Prot
Match: POR_CHLRE (Protochlorophyllide reductase, chloroplastic OS=Chlamydomonas reinhardtii GN=PORA PE=3 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 8.795e-72
Identity = 131/201 (65.17%), Postives = 156/201 (77.61%), Query Frame = -1
Query:  230 GHFXXXXXXXXXLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 832
            GHF         LK +     R IIVGSITGNTNTLAGNVPPKANLGDL G A G+   N   M+DG +F+GAKAYKDSKV  M+T+++ H+RFH+ TGI FASLYPGCIA TGLFREH+PLF+ LFPPFQKYITKGYVSE+EAG+RLA V+SDP L KSG YWSW+  + SF+NQ+S+E +D  KA K+W+IS KLVGL+
Sbjct:  198 GHFLLTNLLLDDLKNAPNKQPRCIIVGSITGNTNTLAGNVPPKANLGDLSGLAAGVPAANP--MMDGQEFNGAKAYKDSKVACMMTVRQMHQRFHDATGITFASLYPGCIAETGLFREHVPLFKTLFPPFQKYITKGYVSEEEAGRRLAAVISDPKLNKSGAYWSWSSTTGSFDNQVSEEVADDSKASKLWDISAKLVGLS 396          
BLAST of CX070525 vs. ExPASy Swiss-Prot
Match: POR_PLEBO (Light-dependent protochlorophyllide reductase OS=Plectonema boryanum GN=por PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.017e-51
Identity = 103/207 (49.76%), Postives = 137/207 (66.18%), Query Frame = -1
Query:  230 GHFXXXXXXXXXLKQSDYPSKRLIIVGSITGNTNTLAGNVP--PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW----NKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 832
            GHF         LK S +   RLII+G++T N+  L G +P    A+LGDL G   G       +MIDG  F   KAYKDSK+CNM+T +E HRR+H+ TGI F +LYPGC+A T LFR  +P+F+ +FP FQK IT GYVS++ AG+R AQVV+DP   +SGV+WSW     +   SF  +LS++ +D  KA+++WE+SEKLVGLA
Sbjct:  118 GHFLLCNLLLEDLKHSTHNDPRLIILGTVTANSKELGGKIPIPAPADLGDLSGLEAGFKA--PIAMIDGKPFKAGKAYKDSKLCNMITSRELHRRYHDSTGIVFNTLYPGCVADTPLFRNSLPVFQKVFPWFQKNITGGYVSQELAGERTAQVVADPEFKQSGVHWSWGNRQKEGRESFVQELSEKVTDDAKAKRMWELSEKLVGLA 322          
BLAST of CX070525 vs. ExPASy Swiss-Prot
Match: POR_SYNY3 (Light-dependent protochlorophyllide reductase OS=Synechocystis sp. (strain PCC 6803) GN=por PE=3 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 1.460e-50
Identity = 104/206 (50.49%), Postives = 136/206 (66.02%), Query Frame = -1
Query:  233 GHFXXXXXXXXXLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA--NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW-NKDSA---SFENQLSQEASDVEKARKVWEISEKLVGL 832
            GHF         LK      KRLII+G++T N+  L G +P  A  +LG+  GF  G       +MI+   F   KAYKDSK+CNMLT +E HRRFH+ETGI F SLYPGC+A T LFR H  LFR +FP FQK +TKGYVS++ AG+R+A VV+D     SGV+WSW N+  A   +F  +LS++ SD +KA+++W++SEKLVGL
Sbjct:  118 GHFLLCNLLLEDLKACPDADKRLIILGTVTANSKELGGKIPIPAPPDLGNFEGFEAGFK--KPIAMINNKKFKSGKAYKDSKLCNMLTTRELHRRFHQETGIVFNSLYPGCVADTPLFRNHYSLFRTIFPWFQKNVTKGYVSQELAGERVAMVVADDKFKDSGVHWSWGNRQQAGREAFVQELSEQGSDAQKAQRMWDLSEKLVGL 321          
The following BLAST results are available for this feature:
BLAST of CX070525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PORA_WHEAT2.013e-9281.19Protochlorophyllide reductase A, chloroplastic OS=... [more]
PORA_HORVU9.992e-9280.69Protochlorophyllide reductase A, chloroplastic OS=... [more]
POR_MARPA1.651e-8676.00Protochlorophyllide reductase, chloroplastic OS=Ma... [more]
POR_CHLRE8.795e-7265.17Protochlorophyllide reductase, chloroplastic OS=Ch... [more]
POR_PLEBO5.017e-5149.76Light-dependent protochlorophyllide reductase OS=P... [more]
POR_SYNY31.460e-5050.49Light-dependent protochlorophyllide reductase OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17C11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17C11-E21-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070525 ID=CX070525; Name=CX070525; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTGAAGCCAAAATGTTTCTCTTTTCATTTCATATTAGACTCTGAAA
TAACTACCACTTTGCAACAAGAGTGAGTGATTTATTGACATTTTTTTTCC
ACAAGCCATCTACATCTACAATTGAAAAGCTGACCACAATTCCAAACTCC
GCTACCTAACAAACCTTCAAGCTCATAAAACCCTCCCGTAACATAAACTG
GTAGATCTGAATCTCCAGGTTTTGAATTAGGCCAAACCAACAAGTTTCTC
ACTTATCTCCCAGACTTTACGTGCCTTCTCAACGTCACTAGCTTCCTGAG
ACAACTGATTCTCAAATGAAGCTGAGTCCTTGTTCCAGCTCCAGTAAACA
CCTGATTTTGTCAAGCTTGGATCGCTCACAACCTGAGCAAGTCTTTTTCC
AGCTTCATCTTCAGAGACATAACCCTTGGTGATGTACTTTTGGAATGGGG
GGAAGAGAAGTCTGAACAAGGGAATGTGCTCCCTGAACAAGCCTGTTGTG
GCAATGCAGCCAGGGTAAAGGGAAGCGAATGCGATGCCAGTTTCCTCGTG
GAACCGCCTGTGAAACTCTTGCATGGTAAGCATGTTGCAGACTTTGCTGT
CCTTGTAGGCCTTGGCACCGTCAAAATCTCCACCGTCAATCATGGATGAG
CTGTTTAGCCCATTTAAGCCTCCAGCAAATCCCCTTAAGTCCCCAAGGTT
GGCCTTAGGAGGTACATTACCAGCCAAGGTATTTGTGTTTCCTGTGATTG
AGCCAACGATGATGAGACGCTTTGATGGGTAATCAGATTGCTTCAAGTCA
TCAAGCAACAGCCGTGAAAGGAGGAAGTGACC
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