CX070471

Overview
NameCX070471
Unique NameCX070471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070471 vs. ExPASy Swiss-Prot
Match: RL7B_SCHPO (60S ribosomal protein L7-B OS=Schizosaccharomyces pombe GN=rpl7b PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.028e-47
Identity = 100/242 (41.32%), Postives = 156/242 (64.46%), Query Frame = 2
Query:   29 FVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDI--KRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKK-QPFKDGGEAGNREEEINELISKM 745
            F  E++LKK K+       ++++ ++      +K+ + K  ++  KR E +  +YR  E + I + ++ +         + KL+F++RI+G +++ PK +KI+  LRL +I +G+FV+ N  + E+LQ VEPYVTYG PN   V+ELIYK+G+  V++QRIPL+DN IIE  LGKY I+ +ED++HEI  VGP+FK+  NFL P  L+ P GG   +K + F +GG+AG R+E IN L+ KM
Sbjct:   14 FAPESLLKKTKAQ------KQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFKQAANFLWPFKLSSPLGGWRERKFKHFIEGGDAGKRDEHINGLVQKM 249          
BLAST of CX070471 vs. ExPASy Swiss-Prot
Match: RL7_DEBHA (60S ribosomal protein L7 OS=Debaryomyces hansenii GN=RPL7 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.754e-47
Identity = 100/238 (42.02%), Postives = 147/238 (61.76%), Query Frame = 2
Query:   38 ETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKK-QPFKDGGEAGNREEEINELISKMN 748
            ET++KK K+ +  A  R A     K      N++ +     R   + K+Y D E  +I+ K+  K +       + KL+F++RI+G + + PK +K+L  LRL +I +GVFVR      E+L+  EPY+ YGYPNL+ ++ L+YK+G+  +++QRI L+DN IIE  LGKYGI+ IED++HEI  VGP+FK+  NFL P  L+ P GG   +K   F  GG+ GNREE IN L+ +MN
Sbjct:    8 ETLVKKSKAQQKTAEERAA----AKVVRQASNQEKRKIIFDRAAAYQKEYTDAERAVIKAKRDAKAAGSYYVDAQPKLVFVVRIKGINKIAPKPRKVLQLLRLTQINAGVFVRLTKATSELLKLAEPYIAYGYPNLSTIRHLVYKRGHGKINKQRIALSDNAIIEANLGKYGILSIEDLIHEIYTVGPNFKQANNFLWPFKLSNPNGGFRTRKFFHFIQGGDTGNREEFINALVKQMN 241          
BLAST of CX070471 vs. ExPASy Swiss-Prot
Match: RL72_PARTE (60S ribosomal protein L7 2 OS=Paramecium tetraurelia GN=Rpl7-2 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.257e-45
Identity = 92/238 (38.66%), Postives = 147/238 (61.76%), Query Frame = 2
Query:   32 VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKM 745
            VA+   +  K  +A+A  R  +L          NK  + +  K  + +  +Y+  +  L+   ++ K         ++KL+ ++RI+G + ++P+ ++ L  L+LR++ +  FVR N   +E+++KVEPYVTYGYP+ A +K LIYK+GYA ++ QRIP+T+NN+IEQ LGK GI  +ED++HEI  VGPHFKE   FL    L  P GG + K++ F + G+ GNRE+ IN+L+ +M
Sbjct:   18 VAKKTQRDSKLRDAVAKRRTERLAA--------NKTRRAQWEKTAQAYEAEYKAADKSLVDNLRKAKTEGGFYVPAEAKLILVVRIRGINTLNPQVRQTLRLLKLRQLHNAAFVRVNKATIEMIRKVEPYVTYGYPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAFKLRGPRGGFIAKRRSFINQGDWGNREDLINDLVKRM 247          
BLAST of CX070471 vs. ExPASy Swiss-Prot
Match: RL71_PARTE (60S ribosomal protein L7 1 OS=Paramecium tetraurelia GN=Rpl7-1 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.257e-45
Identity = 92/238 (38.66%), Postives = 147/238 (61.76%), Query Frame = 2
Query:   32 VAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKM 745
            VA+   +  K  +A+A  R  +L          NK  + +  K  + +  +Y+  +  L+   ++ K         ++KL+ ++RI+G + ++P+ ++ L  L+LR++ +  FVR N   +E+++KVEPYVTYGYP+ A +K LIYK+GYA ++ QRIP+T+NN+IEQ LGK GI  +ED++HEI  VGPHFKE   FL    L  P GG + K++ F + G+ GNRE+ IN+L+ +M
Sbjct:   18 VAKKTQRDSKLRDAVAKRRTERLAA--------NKTRRAQWEKTAQAYEAEYKAADKSLVDNLRKAKTEGGFYVPAEAKLILVVRIRGINTLNPQVRQTLRLLKLRQLHNAAFVRVNKATIEMIRKVEPYVTYGYPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAFKLRGPRGGFIAKRKSFINQGDWGNREDLINDLVKRM 247          
BLAST of CX070471 vs. ExPASy Swiss-Prot
Match: RL7_CANGA (60S ribosomal protein L7 OS=Candida glabrata GN=RPL7 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.064e-44
Identity = 95/242 (39.26%), Postives = 145/242 (59.92%), Query Frame = 2
Query:   35 AETVLKKRKSTEALALTRKAQLELGKYGHGQK--NKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEG--GLLGKKQPFKDGGEAGNREEEINELISKMN 748
            AE +LK     +      K   E  K    ++  NK+ +   ++R     K+Y   E  +I  K+  K S     + + KL+F++RI+G + + PK +K+L  LRL +I SG FV+      E+L+ +EPYV YGYP+ + V++L+YK+G+  +++QRI L+DN I+E  LGK+GI+ I+D++HEI  VGPHFK+  NFL P  L+ P G  G+  K + F  GG  GNRE+ IN+L+  MN
Sbjct:    3 AEKILKPESQLKKAKYDEKKSEEFLKARAARRVANKQKRAAILERNAAHQKEYEAAERAVIDAKREAKASGSYYVEAQPKLVFVVRIKGINKIPPKPRKVLQLLRLTQINSGTFVKVTKATSELLKLIEPYVAYGYPSYSTVRQLVYKRGHGKINKQRIALSDNAIVEANLGKFGILSIDDLIHEIVTVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGAFGNREQFINKLVKAMN 244          
BLAST of CX070471 vs. ExPASy Swiss-Prot
Match: RL7_DROME (60S ribosomal protein L7 OS=Drosophila melanogaster GN=RpL7 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.815e-44
Identity = 87/202 (43.07%), Postives = 136/202 (67.33%), Query Frame = 2
Query:  143 KVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGK-YGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKM 745
            K E++ R E++  +Y   E   I++++  K+  +     ++KL F++RI+G + + PK +K+L   RLR+I +GVF++ N   + +L+  EPY+T+GYPNL +V+ELIYK+G+   +RQR+P+TDN +IE+ L + + I C+ED+VHEI  VGP+FK   NFL P  LN P GG   K   + +GG+ GNRE++IN L+ KM
Sbjct:   50 KKENLVRAEKYQNEYIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNGVFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPITDNFVIERKLRQAHQIQCVEDLVHEIFTVGPNFKYASNFLWPFKLNTPTGGWRKKANHYVNGGDFGNREDQINRLLRKM 251          
BLAST of CX070471 vs. ExPASy Swiss-Prot
Match: RL7L_PONAB (60S ribosomal protein L7-like 1 OS=Pongo abelii GN=RPL7L1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.621e-43
Identity = 97/248 (39.11%), Postives = 149/248 (60.08%), Query Frame = 2
Query:    5 EAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 748
            E  Q+ +  V E +LKKRK+ +AL  T+  Q  L K    ++ +K K    KR E F+     Q+ D++R+++   +   +    K  L F++RI+    +    ++ +  LRL++IFSGVFV+     L++L+ VEPYVT+G+PNL +V+ELI K+G A V  + IPLTDN +IE+ LGK+G+IC+ED++HEIA  G HF+E+  FL P  L+        +    K+ G  G R E IN+LI ++N
Sbjct:    3 EQEQRKIPLVPENLLKKRKAYQALKATQAEQALLAK----KEQRKGKGLRFKRLESFLHDSWRQKRDMVRLRRLEMKPHALELPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLRPFHLSVARHATKNRVGFLKEMGTPGYRGERINQLIRQLN 246          
BLAST of CX070471 vs. ExPASy Swiss-Prot
Match: RL7L_HUMAN (60S ribosomal protein L7-like 1 OS=Homo sapiens GN=RPL7L1 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.838e-43
Identity = 98/248 (39.52%), Postives = 148/248 (59.68%), Query Frame = 2
Query:    5 EAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 748
            E  Q+ +  V E +LKKRK+ +AL  T+  Q  L K    ++ KK K    KR E F+     Q+ D +R+++   +   +    K  L F++RI+    +    ++ +  LRL++IFSGVFV+     L++L+ VEPYVT+G+PNL +V+ELI K+G A V  + IPLTDN +IE+ LGK+G+IC+ED++HEIA  G HF+E+  FL P  L+        +    K+ G  G R E IN+LI ++N
Sbjct:    3 EQEQRKIPLVPENLLKKRKAYQALKATQAKQALLAK----KEQKKGKGLRFKRLESFLHDSWRQKRDKVRLRRLEVKPHALELPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLCPFHLSVARHATKNRVGFLKEMGTPGYRGERINQLIRQLN 246          
BLAST of CX070471 vs. ExPASy Swiss-Prot
Match: RL7L_MOUSE (60S ribosomal protein L7-like 1 OS=Mus musculus GN=Rpl7l1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.101e-41
Identity = 91/249 (36.55%), Postives = 148/249 (59.44%), Query Frame = 2
Query:    2 EEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 748
            EE  ++ +  V E +LKKRK+ +AL  T+  Q  L K     + +K K    +R E F+     Q+ D +R+++   + + +    K  L F+IR++    +    K  +  L L+++FSGVFV+     + +L+ VEPYVT+G+PNL +V+ELI K+G A ++ + +PLTDN +IE+ LG++G+IC+ED++HEIA  G HF+EV +FL P  L+        +    K+ G  G R + IN+LI ++N
Sbjct:    3 EEGERKKIPLVPENLLKKRKAYQALKATQAKQALLAK-----RERKGKQFRFRRLESFVHDSWRQQRDKVRVQRLEVKPRALEVPDKHPLAFVIRMERIEGVSLLVKSTIMKLGLKKLFSGVFVKVTPQSVRMLRTVEPYVTWGFPNLKSVRELILKRGQAKINNKTVPLTDNTVIEEHLGRFGVICLEDLIHEIAFPGKHFQEVSSFLCPFLLSVARHATRNRVGFRKEMGSPGYRGDRINQLIRQLN 246          
BLAST of CX070471 vs. ExPASy Swiss-Prot
Match: RL7L_PIG (60S ribosomal protein L7-like 1 OS=Sus scrofa GN=RPL7L1 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.184e-41
Identity = 94/249 (37.75%), Postives = 147/249 (59.04%), Query Frame = 2
Query:    2 EEAAQQPLAFVAETVLKKRKSTEALALTRKAQLELGKYGHGQKNKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 748
            EE  ++ +  V E +LKKRK+ +AL  T+  Q  L K    ++ +K K    KR E F+     Q  D +R+++   +   +    K  L F++RI+  S +    ++ +  LRL++IFSGVF++     ++ L+ VEPYVT+G+PNL +V+ELI K+G A V  + IPLTDN +IE+ LGK+G+IC+ED++HEIA  G +F+ +  FL P  L+        +    K+ G  G R E IN+LI ++N
Sbjct:    3 EEEQRKKIPLVPENLLKKRKAYQALKATQAKQALLQK----KEQRKGKELKFKRLEWFLHDSWRQLRDRVRLRRLEVKPHGLEVPDKHSLAFVVRIERISGVSSVVQRTIARLRLKKIFSGVFMQVTPQTIKTLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKIIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKNFQAISGFLRPFQLSVARHATKNRVGFLKEVGSPGYRGERINQLIRQLN 247          
The following BLAST results are available for this feature:
BLAST of CX070471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RL7B_SCHPO1.028e-4741.3260S ribosomal protein L7-B OS=Schizosaccharomyces ... [more]
RL7_DEBHA1.754e-4742.0260S ribosomal protein L7 OS=Debaryomyces hansenii ... [more]
RL72_PARTE1.257e-4538.6660S ribosomal protein L7 2 OS=Paramecium tetraurel... [more]
RL71_PARTE1.257e-4538.6660S ribosomal protein L7 1 OS=Paramecium tetraurel... [more]
RL7_CANGA1.064e-4439.2660S ribosomal protein L7 OS=Candida glabrata GN=RP... [more]
RL7_DROME1.815e-4443.0760S ribosomal protein L7 OS=Drosophila melanogaste... [more]
RL7L_PONAB2.621e-4339.1160S ribosomal protein L7-like 1 OS=Pongo abelii GN... [more]
RL7L_HUMAN5.838e-4339.5260S ribosomal protein L7-like 1 OS=Homo sapiens GN... [more]
RL7L_MOUSE1.101e-4136.5560S ribosomal protein L7-like 1 OS=Mus musculus GN... [more]
RL7L_PIG4.184e-4137.7560S ribosomal protein L7-like 1 OS=Sus scrofa GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17A02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17A02-A3-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070471 ID=CX070471; Name=CX070471; organism=Citrus sinensis; type=EST; length=780bp
GGAAGAAGCGGCACAGCAACCGTTAGCTTTTGTGGCGGAAACGGTGCTGA
AGAAAAGAAAAAGCACCGAGGCTTTGGCGCTGACGAGGAAAGCCCAGTTG
GAATTGGGAAAGTATGGCCATGGACAGAAGAACAAGAAGAGCAAAGTTGA
GGATATCAAAAGACCCGAGCAATTTATCAAACAGTATAGGGACCAGGAAT
TGGACCTTATCCGAATGAAACAAAGAGGGAAAAGGTCGAAAAAAGTGATC
GGGAAGCCAAAATCTAAGTTGCTTTTTATTATACGCATACAAGGCACAAG
TGATATGCACCCTAAGACTAAGAAGATTCTCTACAACCTTAGATTGAGGA
GAATTTTCAGTGGTGTCTTTGTCAGGGCTAATGATGGTATGTTAGAAGTG
CTGCAAAAGGTGGAGCCATATGTCACATATGGATATCCTAATCTTGCAAA
TGTGAAGGAGCTAATTTACAAGAAGGGTTATGCAACTGTAGATAGGCAAA
GAATTCCTCTCACAGACAATAACATTATTGAACAGACGTTGGGGAAATAT
GGCATTATATGCATTGAGGATATAGTACATGAAATAGCCAATGTTGGTCC
TCATTTTAAAGAGGTCATCAACTTTCTGGGTCCTTTAACACTAAACAAGC
CTGAAGGAGGATTGCTAGGGAAGAAACAACCATTCAAGGACGGTGGAGAA
GCTGGAAACCGTGAGGAAGAAATCAACGAATTAATCAGTAAGATGAATTA
GGAGTTATGATTCCATGAGAAGCAAATGAT
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