CX070470

Overview
NameCX070470
Unique NameCX070470
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070470 vs. ExPASy Swiss-Prot
Match: RL7C_SCHPO (60S ribosomal protein L7-C OS=Schizosaccharomyces pombe GN=rpl7c PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.994e-46
Identity = 93/197 (47.21%), Postives = 134/197 (68.02%), Query Frame = -2
Query:  248 KRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKK-QPFKDGGEAGNREEEINELISKM 835
            KR E +  +YR  E + I + ++ +         ++KL+F+IRI+G +++ PK +KI+  LRL +I +GVFV+ N    E+LQ VEPYVTYG PNL  V+EL+YK+G+  V++QRI L+DN IIE  LGKY I+ IED++HEI  VGP+FK+  NF+ P  L+ P GG   +K + F +GG+AG R+E IN L+ KM
Sbjct:   54 KRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFKQAANFIWPFQLSSPLGGWRDRKFKHFIEGGDAGKRDEHINSLVRKM 250          
BLAST of CX070470 vs. ExPASy Swiss-Prot
Match: RL7_DEBHA (60S ribosomal protein L7 OS=Debaryomyces hansenii GN=RPL7 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.941e-45
Identity = 91/207 (43.96%), Postives = 134/207 (64.73%), Query Frame = -2
Query:  245 NKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKK-QPFKDGGEAGNREEEINELISKMN 862
            N++ +     R   + K+Y D E  +I+ K+  K +       + KL+F++RI+G + + PK +K+L  LRL +I +GVFVR      E+L+  EPY+ YGYPNL+ ++ L+YK+G+  +++QRI L+DN IIE  LGKYGI+ IED++HEI  VGP+FK+  NFL P  L+ P GG   +K   F  GG+ GNREE IN L+ +MN
Sbjct:   35 NQEKRKIIFDRAAAYQKEYTDAERAVIKAKRDAKAAGSYYVDAQPKLVFVVRIKGINKIAPKPRKVLQLLRLTQINAGVFVRLTKATSELLKLAEPYIAYGYPNLSTIRHLVYKRGHGKINKQRIALSDNAIIEANLGKYGILSIEDLIHEIYTVGPNFKQANNFLWPFKLSNPNGGFRTRKFFHFIQGGDTGNREEFINALVKQMN 241          
BLAST of CX070470 vs. ExPASy Swiss-Prot
Match: RL72_PARTE (60S ribosomal protein L7 2 OS=Paramecium tetraurelia GN=Rpl7-2 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.311e-45
Identity = 85/205 (41.46%), Postives = 135/205 (65.85%), Query Frame = -2
Query:  248 NKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKM 862
            NK  + +  K  + +  +Y+  +  L+   ++ K         ++KL+ ++RI+G + ++P+ ++ L  L+LR++ +  FVR N   +E+++KVEPYVTYGYP+ A +K LIYK+GYA ++ QRIP+T+NN+IEQ LGK GI  +ED++HEI  VGPHFKE   FL    L  P GG + K++ F + G+ GNRE+ IN+L+ +M
Sbjct:   43 NKTRRAQWEKTAQAYEAEYKAADKSLVDNLRKAKTEGGFYVPAEAKLILVVRIRGINTLNPQVRQTLRLLKLRQLHNAAFVRVNKATIEMIRKVEPYVTYGYPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAFKLRGPRGGFIAKRRSFINQGDWGNREDLINDLVKRM 247          
BLAST of CX070470 vs. ExPASy Swiss-Prot
Match: RL71_PARTE (60S ribosomal protein L7 1 OS=Paramecium tetraurelia GN=Rpl7-1 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.311e-45
Identity = 85/205 (41.46%), Postives = 135/205 (65.85%), Query Frame = -2
Query:  248 NKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKM 862
            NK  + +  K  + +  +Y+  +  L+   ++ K         ++KL+ ++RI+G + ++P+ ++ L  L+LR++ +  FVR N   +E+++KVEPYVTYGYP+ A +K LIYK+GYA ++ QRIP+T+NN+IEQ LGK GI  +ED++HEI  VGPHFKE   FL    L  P GG + K++ F + G+ GNRE+ IN+L+ +M
Sbjct:   43 NKTRRAQWEKTAQAYEAEYKAADKSLVDNLRKAKTEGGFYVPAEAKLILVVRIRGINTLNPQVRQTLRLLKLRQLHNAAFVRVNKATIEMIRKVEPYVTYGYPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAFKLRGPRGGFIAKRKSFINQGDWGNREDLINDLVKRM 247          
BLAST of CX070470 vs. ExPASy Swiss-Prot
Match: RL7_DROME (60S ribosomal protein L7 OS=Drosophila melanogaster GN=RpL7 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 2.146e-44
Identity = 87/202 (43.07%), Postives = 136/202 (67.33%), Query Frame = -2
Query:  248 KVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGK-YGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKM 850
            K E++ R E++  +Y   E   I++++  K+  +     ++KL F++RI+G + + PK +K+L   RLR+I +GVF++ N   + +L+  EPY+T+GYPNL +V+ELIYK+G+   +RQR+P+TDN +IE+ L + + I C+ED+VHEI  VGP+FK   NFL P  LN P GG   K   + +GG+ GNRE++IN L+ KM
Sbjct:   50 KKENLVRAEKYQNEYIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNGVFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPITDNFVIERKLRQAHQIQCVEDLVHEIFTVGPNFKYASNFLWPFKLNTPTGGWRKKANHYVNGGDFGNREDQINRLLRKM 251          
BLAST of CX070470 vs. ExPASy Swiss-Prot
Match: RL7_CANGA (60S ribosomal protein L7 OS=Candida glabrata GN=RPL7 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.781e-44
Identity = 88/208 (42.31%), Postives = 134/208 (64.42%), Query Frame = -2
Query:  245 NKKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEG--GLLGKKQPFKDGGEAGNREEEINELISKMN 862
            NK+ +   ++R     K+Y   E  +I  K+  K S     + + KL+F++RI+G + + PK +K+L  LRL +I SG FV+      E+L+ +EPYV YGYP+ + V++L+YK+G+  +++QRI L+DN I+E  LGK+GI+ I+D++HEI  VGPHFK+  NFL P  L+ P G  G+  K + F  GG  GNRE+ IN+L+  MN
Sbjct:   37 NKQKRAAILERNAAHQKEYEAAERAVIDAKREAKASGSYYVEAQPKLVFVVRIKGINKIPPKPRKVLQLLRLTQINSGTFVKVTKATSELLKLIEPYVAYGYPSYSTVRQLVYKRGHGKINKQRIALSDNAIVEANLGKFGILSIDDLIHEIVTVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGAFGNREQFINKLVKAMN 244          
BLAST of CX070470 vs. ExPASy Swiss-Prot
Match: RL7L_PONAB (60S ribosomal protein L7-like 1 OS=Pongo abelii GN=RPL7L1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.945e-37
Identity = 82/205 (40.00%), Postives = 126/205 (61.46%), Query Frame = -2
Query:  245 KKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 859
            +K K    KR E F+     Q+ D++R+++   +   +    K  L F++RI+    +    ++ +  LRL++IFSGVFV+     L++L+ VEPYVT+G+PNL +V+ELI K+G A V  + IPLTDN +IE+ LGK+G+IC+ED++HEIA  G HF+E+  FL P  L+        +    K+ G  G R E IN+LI ++N
Sbjct:   42 RKGKGLRFKRLESFLHDSWRQKRDMVRLRRLEMKPHALELPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLRPFHLSVARHATKNRVGFLKEMGTPGYRGERINQLIRQLN 246          
BLAST of CX070470 vs. ExPASy Swiss-Prot
Match: RL7L_HUMAN (60S ribosomal protein L7-like 1 OS=Homo sapiens GN=RPL7L1 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.334e-37
Identity = 83/205 (40.49%), Postives = 125/205 (60.98%), Query Frame = -2
Query:  245 KKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 859
            KK K    KR E F+     Q+ D +R+++   +   +    K  L F++RI+    +    ++ +  LRL++IFSGVFV+     L++L+ VEPYVT+G+PNL +V+ELI K+G A V  + IPLTDN +IE+ LGK+G+IC+ED++HEIA  G HF+E+  FL P  L+        +    K+ G  G R E IN+LI ++N
Sbjct:   42 KKGKGLRFKRLESFLHDSWRQKRDKVRLRRLEVKPHALELPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLCPFHLSVARHATKNRVGFLKEMGTPGYRGERINQLIRQLN 246          
BLAST of CX070470 vs. ExPASy Swiss-Prot
Match: RL7L_MOUSE (60S ribosomal protein L7-like 1 OS=Mus musculus GN=Rpl7l1 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.068e-35
Identity = 76/205 (37.07%), Postives = 125/205 (60.98%), Query Frame = -2
Query:  245 KKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 859
            +K K    +R E F+     Q+ D +R+++   + + +    K  L F+IR++    +    K  +  L L+++FSGVFV+     + +L+ VEPYVT+G+PNL +V+ELI K+G A ++ + +PLTDN +IE+ LG++G+IC+ED++HEIA  G HF+EV +FL P  L+        +    K+ G  G R + IN+LI ++N
Sbjct:   42 RKGKQFRFRRLESFVHDSWRQQRDKVRVQRLEVKPRALEVPDKHPLAFVIRMERIEGVSLLVKSTIMKLGLKKLFSGVFVKVTPQSVRMLRTVEPYVTWGFPNLKSVRELILKRGQAKINNKTVPLTDNTVIEEHLGRFGVICLEDLIHEIAFPGKHFQEVSSFLCPFLLSVARHATRNRVGFRKEMGSPGYRGDRINQLIRQLN 246          
BLAST of CX070470 vs. ExPASy Swiss-Prot
Match: RL7L_PIG (60S ribosomal protein L7-like 1 OS=Sus scrofa GN=RPL7L1 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.378e-35
Identity = 79/205 (38.54%), Postives = 123/205 (60.00%), Query Frame = -2
Query:  245 KKSKVEDIKRPEQFIKQYRDQELDLIRMKQRGKRSKKVIGKPKSKLLFIIRIQGTSDMHPKTKKILYNLRLRRIFSGVFVRANDGMLEVLQKVEPYVTYGYPNLANVKELIYKKGYATVDRQRIPLTDNNIIEQTLGKYGIICIEDIVHEIANVGPHFKEVINFLGPLTLNKPEGGLLGKKQPFKDGGEAGNREEEINELISKMN 859
            +K K    KR E F+     Q  D +R+++   +   +    K  L F++RI+  S +    ++ +  LRL++IFSGVF++     ++ L+ VEPYVT+G+PNL +V+ELI K+G A V  + IPLTDN +IE+ LGK+G+IC+ED++HEIA  G +F+ +  FL P  L+        +    K+ G  G R E IN+LI ++N
Sbjct:   43 RKGKELKFKRLEWFLHDSWRQLRDRVRLRRLEVKPHGLEVPDKHSLAFVVRIERISGVSSVVQRTIARLRLKKIFSGVFMQVTPQTIKTLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKIIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKNFQAISGFLRPFQLSVARHATKNRVGFLKEVGSPGYRGERINQLIRQLN 247          
The following BLAST results are available for this feature:
BLAST of CX070470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RL7C_SCHPO2.994e-4647.2160S ribosomal protein L7-C OS=Schizosaccharomyces ... [more]
RL7_DEBHA1.941e-4543.9660S ribosomal protein L7 OS=Debaryomyces hansenii ... [more]
RL72_PARTE3.311e-4541.4660S ribosomal protein L7 2 OS=Paramecium tetraurel... [more]
RL71_PARTE3.311e-4541.4660S ribosomal protein L7 1 OS=Paramecium tetraurel... [more]
RL7_DROME2.146e-4443.0760S ribosomal protein L7 OS=Drosophila melanogaste... [more]
RL7_CANGA4.781e-4442.3160S ribosomal protein L7 OS=Candida glabrata GN=RP... [more]
RL7L_PONAB1.945e-3740.0060S ribosomal protein L7-like 1 OS=Pongo abelii GN... [more]
RL7L_HUMAN4.334e-3740.4960S ribosomal protein L7-like 1 OS=Homo sapiens GN... [more]
RL7L_MOUSE1.068e-3537.0760S ribosomal protein L7-like 1 OS=Mus musculus GN... [more]
RL7L_PIG2.378e-3538.5460S ribosomal protein L7-like 1 OS=Sus scrofa GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_17A02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-17A02-A3-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070470 ID=CX070470; Name=CX070470; organism=Citrus sinensis; type=EST; length=863bp
CTTTTTTTTTAAACAGCAAGCTTAATATATTTCGCAAGTGAAATGATAAT
AAAATACAGATTATCCCTAACAATAGAACCTTCAAAACTCGTTAACCTGG
TATTAAGCTTAACAGGATTAGAAAAACATCAAAATTGGGCTACATAGGAC
TACAGTATATCTTCTCTTTAGCAGAACCATTCTTTTAGTGCCGAATCATT
GATTCCATTTTCATCATTTGCTTCTCATGGAATCATAACTCCTAATTCAT
CTTACTGATTAATTCGTTGATTTCTTCCTCACGGTTTCCAGCTTCTCCAC
CGTCCTTGAATGGTTGTTTCTTCCCTAGCAATCCTCCTTCAGGCTTGTTT
AGTGTTAAAGGACCCAGAAAGTTGATGACCTCTTTAAAATGAGGACCAAC
ATTGGCTATTTCATGTACTATATCCTCAATGCATATAATGCCATATTTCC
CCAACGTCTGTTCAATAATGTTATTGTCTGTGAGAGGAATTCTTTGCCTA
TCTACAGTTGCATAACCCTTCTTGTAAATTAGCTCCTTCACATTTGCAAG
ATTAGGATATCCATATGTGACATATGGCTCCACCTTTTGCAGCACTTCTA
ACATACCATCATTAGCCCTGACAAAGACACCACTGAAAATTCTCCTCAAT
CTAAGGTTGTAGAGAATCTTCTTAGTCTTAGGGTGCATATCACTTGTGCC
TTGTATGCGTATAATAAAAAGCAACTTAGATTTTGGCTTCCCGATCACTT
TTTTCGACCTTTTCCCTCTTTGTTTCATTCGGATAAGGTCCAATTCCTGG
TCCCTATACTGTTTGATAAATTGCTCGGGTCTTTTGATATCCTCAACTTT
GCTCTTCTTGTTC
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