CX070449

Overview
NameCX070449
Unique NameCX070449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX070449 vs. ExPASy Swiss-Prot
Match: AB33G_ARATH (ABC transporter G family member 33 OS=Arabidopsis thaliana GN=ABCG33 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.848e-12
Identity = 39/127 (30.71%), Postives = 59/127 (46.46%), Query Frame = -3 
Query:  435 VIVYAMIGFEWTAVKFIWYIXXXXXXXXXXXFYGMMCVAMTPNLHIATVVSIAFYGIWNVFSGFXXXXXXXXXXXXXXXWANPIAWTLYGLVASQFGDIDDTRLESGE--TVKQFLRSYFGFKHDFL 809
            +++Y MIGF  +  K  W +           +  M  +++TPN  +A ++   F+  +N+F+GF               +  P +WTL    +SQ+GDI       GE  TV  FL  YFGF HD L
Sbjct: 1257 IVIYPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNFMVAAILQSLFFTTFNIFAGFLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQKINAFGETKTVASFLEDYFGFHHDRL 1383
The following BLAST results are available for this feature:
BLAST of CX070449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
AB33G_ARATH5.848e-1230.71ABC transporter G family member 33 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_16H03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-16H03-P6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070449 ID=CX070449; Name=CX070449; organism=Citrus sinensis; type=EST; length=823bp
AAAGTTATTGCCCATATCGAATCATTAAAAGGCTTGATTAAGGAGTGGCA
GAGCTACATAAGTACATATACCTCAAGCCTCAAGAGACTTGGAAGAGAAT
AAAAACACCCTATGACAAAATAGTTTCCGTATTTATGCTTTCCAAGTAAT
AGTTTTTAGAACACACTTTTGCAGCAAGAGGAAAAAAAAACAAAACAAAA
ATCACAATACTACATTGTCTGCCGACAGTTCTCAGAAATCTCCATTGCAA
AAGAGATTCTAGACATACTTCAAAAATATAAACAAATAAATAGCAAATTT
TTTCAATACTCAAAGCGACTGCTCAAAGACAAATTAAATTACTATCGCCT
CTGGAAATTGAATGCCTTAATTCCAAGAGCAAAGACAAACACGAAGAGCA
CTGTGAATGCAACATGAACAGCTGCAATGACTCCTAGAAAATCATGTTTA
AAACCAAAATAACTTCTCAAAAACTGTTTCACTGTTTCACCTGACTCAAG
TCTTGTGTCGTCTATATCTCCAAATTGTGATGCAACCAATCCATACAATG
TCCAAGCTATAGGGTTTGCCCAGTAGTACCATCTCCACCATATTGGAATC
CTTGTTCTTGGGATAATAAACCCCGAAAAGACGTTCCATATTCCATAAAA
TGCAATTGAAACAACGGTCGCAATATGTAGGTTTGGCGTCATAGCAACAC
ACATCATGCCATAGAAGGTGAAGAGCAAAAAGCTCCAGAACATGAAGAAT
ATATACCAAATGAACTTTACAGCAGTCCATTCAAATCCGATCATGGCATA
GACTATAACACCATAAACTACAG
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