CX070403

Overview
NameCX070403
Unique NameCX070403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070403 vs. ExPASy Swiss-Prot
Match: XYND_RUMFL (Xylanase/beta-glucanase OS=Ruminococcus flavefaciens GN=xynD PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.741e-13
Identity = 66/235 (28.09%), Postives = 104/235 (44.26%), Query Frame = 1
Query:   97 ISSLMVASASNFY--------QDFDITWGDGRGKILNNGQLLSLSLDKA-------------SGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLW---NADDWATRGGLIKTDWTQAPFTASYR--NFNAN 714
            IS      A +F+        + FD  W   R  ++N+G  L LS+D+              SG  F++ + Y +G  +  ++ +  +  G V++++     S  + WDEID E LG    +   +  N +TNG+G  E+ + L FD +  +HTY   W P  I +YVDG   RE      +    PK  P +I  + W     DDW      +K    + P TA Y+   +N N
Sbjct:  575 ISDFRTGKAGDFFASDGWTNGKPFDCWWYK-RNAVINDG-CLQLSIDQKWTNDKNPDWDPRYSGGEFRTNNFYHYGYYECSMQAMKND--GVVSSFFTYTGPSDDNPWDEIDIEILGK---NTTQVQFNYYTNGQGKHEKLYDLGFDSSEAYHTYGFDWQPNYIAWYVDG---REVYRATQD---IPKT-PGKIMMNAWPGLTVDDW------LKAFNGRTPLTAHYQWVTYNKN 789          
BLAST of CX070403 vs. ExPASy Swiss-Prot
Match: CRH1_YEAST (Probable glycosidase CRH1 OS=Saccharomyces cerevisiae GN=CRH1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.741e-13
Identity = 61/204 (29.90%), Postives = 97/204 (47.55%), Query Frame = 1
Query:  115 ASASNFYQDFDIT--WGDG---RGKILNNGQLLSLSLDKA-SGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQ--QFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLI-----KTDWTQAPFT 687
            A A++F +DF  +  W       G+I      LS++L K       +S    ++GK+++ LK    N  G V+++YL+S     DEID E++G   GD     +N F+ G        +FH    PT  FH Y++ W   +  +Y+DG  +R   N  S G  +P++ PM +   +W   D     G I     +T++  APFT
Sbjct:   53 ALATSFSEDFSSSSKWFTDLKHAGEIKYGSDGLSMTLAKRYDNPSLKSNFYIMYGKLEVILKAA--NGTGIVSSFYLQS--DDLDEIDIEWVG---GDNTQFQSNFFSKGDTTTYDRGEFHGVDTPTDKFHNYTLDWAMDKTTWYLDGESVRVLSNTSSEG--YPQS-PMYLMMGIWAGGDPDNAAGTIEWAGGETNYNDAPFT 246          
BLAST of CX070403 vs. ExPASy Swiss-Prot
Match: GUB_CLOTM (Beta-glucanase OS=Clostridium thermocellum GN=licB PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.011e-12
Identity = 54/167 (32.34%), Postives = 80/167 (47.90%), Query Frame = 1
Query:  181 NNGQLLSLSLDKASGSGFQSKS-EY----LFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPI-REFKNLESNGVLFPKNQPMRIYSSLW---NADDWATR 645
            +NG+++ L+LD+  G  +  KS EY     FG    ++++    + G V++++     S  + WDEID EFLG    D      N + N  G  E   +L FD + DFHTY   W P  I FYVDG  + R  +N+           P +I  +LW     D+W  R
Sbjct:   72 SNGKMI-LTLDREYGGSYPYKSGEYRSKSFFGYGYYEVRMKAAKNVGIVSSFFTYTGPSDNNPWDEIDIEFLGK---DTTKAQFNWYKNEVGGNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVDGKKVYRGTRNIPVT--------PGKIMMNLWPGKGVDEWLGR 226          
BLAST of CX070403 vs. ExPASy Swiss-Prot
Match: CRF1_ASPFU (Probable glycosidase crf1 OS=Aspergillus fumigatus GN=crf1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 7.245e-11
Identity = 55/168 (32.74%), Postives = 80/168 (47.62%), Query Frame = 1
Query:  250 YLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTAD----FHTYSVLWNPQRIVFYVDGSPIREFK-NLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIK-----TDWTQAPFT---ASYRNFNAN 714
            + FGK ++ +K  PG   G V++  L+S     DE+D+E LG   GD   + TN F  GKGD        + P A     FHTY++ W    + + +DG+ +R    N    G  FP+  PMR+    W   D +   G I+     TD++  P+T    S R  NAN
Sbjct:   89 FFFGKAEVVMKAAPGT--GVVSSIVLES--DDLDEVDWEVLG---GDTTQVQTNYF--GKGDTTTYDRGTYVPVATPQETFHTYTIDWTKDAVTWSIDGAVVRTLTYNDAKGGTRFPQT-PMRLRLGSWAGGDPSNPKGTIEWAGGLTDYSAGPYTMYVKSVRIENAN 246          
The following BLAST results are available for this feature:
BLAST of CX070403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
XYND_RUMFL7.741e-1328.09Xylanase/beta-glucanase OS=Ruminococcus flavefacie... [more]
CRH1_YEAST7.741e-1329.90Probable glycosidase CRH1 OS=Saccharomyces cerevis... [more]
GUB_CLOTM1.011e-1232.34Beta-glucanase OS=Clostridium thermocellum GN=licB... [more]
CRF1_ASPFU7.245e-1132.74Probable glycosidase crf1 OS=Aspergillus fumigatus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_16E12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-16E12-J24-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070403 ID=CX070403; Name=CX070403; organism=Citrus sinensis; type=EST; length=748bp
ACCAACCCTTATAAGCTGCTTTCTGAAAACTCTCTCTTTATTGATTGCAG
TACTATGGCTTACTCAAAAAATTTTACTCTGCTCATCTCTATAGCAATCA
GCTCTTTGATGGTTGCTTCTGCTAGTAATTTCTACCAAGACTTTGATATC
ACTTGGGGAGATGGCCGTGGTAAGATACTCAACAACGGCCAGCTTCTCTC
CCTCTCCCTTGACAAAGCCTCAGGCTCAGGCTTCCAGTCCAAGAGCGAGT
ACCTTTTTGGCAAAATCGACATGCAACTCAAGCTTGTCCCTGGCAATTCT
GCCGGCACAGTCACCGCCTACTACTTAAAATCACCAGGATCAACATGGGA
TGAGATAGACTTTGAATTCTTGGGGAATTTAAGTGGTGATCCTTATACTC
TTCATACTAATGTGTTCACAAATGGCAAAGGTGACAGAGAGCAACAATTC
CACCTCTGGTTTGACCCCACTGCTGACTTTCACACCTATTCCGTTCTCTG
GAACCCCCAACGTATTGTCTTCTATGTTGATGGCTCGCCAATTAGAGAGT
TCAAGAACTTGGAATCAAACGGCGTACTCTTTCCCAAAAACCAGCCGATG
AGGATTTACTCGAGTCTCTGGAACGCCGATGACTGGGCCACGAGAGGTGG
CCTTATCAAAACTGACTGGACCCAAGCTCCCTTCACTGCTTCTTACAGAA
ACTTCAATGCCAATGCTTGCGTCTGGTCTAATGGAAAATCCTCTTGCA
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