DR404322

Overview
NameDR404322
Unique NameDR404322
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4081 contig Csv1_Contig4081:763..1483. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPL_SYNY3 (ATP synthase subunit c OS=Synechocystis sp. (strain PCC 6803) GN=atpE PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.319e-19
Identity = 52/80 (65.00%), Postives = 59/80 (73.75%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 401
            M+  ++AASVIAA LAVGL +I                IARQPEAEGKIRGTLLL+LAFME+LTIYGLV+AL LLFANPF
Sbjct:    1 MDSTVAAASVIAAALAVGLGAIGPGIGQGNASGQAVSGIARQPEAEGKIRGTLLLTLAFMESLTIYGLVIALVLLFANPF 80
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPL_SYNJB (ATP synthase subunit c OS=Synechococcus sp. GN=atpE PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.166e-19
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 401
            M+PL SAASV++A LA+GL S+                +ARQPEAE KIRG LL+SLAFMEALTIYGLVVAL LLFANPF
Sbjct:    1 MDPLTSAASVLSAALAIGLGSLGPGLGQGNAAAAAMEGLARQPEAEDKIRGNLLVSLAFMEALTIYGLVVALVLLFANPF 80
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPL_SYNJA (ATP synthase subunit c OS=Synechococcus sp. (strain JA-3-3Ab) GN=atpE PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.166e-19
Identity = 51/80 (63.75%), Postives = 58/80 (72.50%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF 401
            M+PL SAASV++A LA+GL S+                +ARQPEAE KIRG LL+SLAFMEALTIYGLVVAL LLFANPF
Sbjct:    1 MDPLTSAASVLSAALAIGLGSLGPGLGQGNAAAAAMEGLARQPEAEDKIRGNLLVSLAFMEALTIYGLVVALVLLFANPF 80
The following BLAST results are available for this feature:
BLAST of DR404322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPL_SYNY32.319e-1965.00ATP synthase subunit c OS=Synechocystis sp. (strai... [more]
ATPL_SYNJB5.166e-1963.75ATP synthase subunit c OS=Synechococcus sp. GN=atp... [more]
ATPL_SYNJA5.166e-1963.75ATP synthase subunit c OS=Synechococcus sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245P12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245P12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404322 ID=DR404322; Name=DR404322; organism=Citrus sinensis; type=EST; length=722bp
GGGGGGTTCAATAATAATATTATTANNNCGCCAATTNNNNGTTCTTAGTT
ACTTCGGCTGGGCGAATCCTAGTGACGGAATAATTAAGTCATAATTTATT
GGACGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATTTTAGTGCG
AGGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCT
GGGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTAC
TGCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGAGGCAGAGG
GAAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTA
ACAATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTT
TGTTTAATCCTAGAAATAGGAAGGGCAATTTACTTATTTTTTTTCTCTTA
TTTATTATATCCGTGTTTCTGGCTTTTTTGAATTCTATCAAGATTTAACT
CCTCCAATTGGAAGGACTGATTTGAGGATGGGGAATTAGGATAGGCATAC
CAGTTCGCCTTTTTCTTTCCCTTTCTTAGTCTAAAGGAAACCCTCTTTTT
AAGTGATGCTGCAACAAACNGAGGGGTTTTGCAATGGACAGGAGTCCCGG
CCCCNNNTNCTAATAAGTATCCCTCTTATCGGGAATCCCCAATTGCCAAT
TCAAAGAAAGGATTTCGAAATC
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