DR404322

Overview
NameDR404322
Unique NameDR404322
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4081 contig Csv1_Contig4081:763..1483. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_CARPA (ATP synthase subunit c, chloroplastic OS=Carica papaya GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.693e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_CALFG (ATP synthase subunit c, chloroplastic OS=Calycanthus floridus var. glaucus GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.693e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_BUXMI (ATP synthase subunit c, chloroplastic OS=Buxus microphylla GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.693e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_BARVE (ATP synthase subunit c, chloroplastic OS=Barbarea verna GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.693e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_ANTFO (ATP synthase subunit c, chloroplastic OS=Anthoceros formosae GN=atpH PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.693e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_AMBTC (ATP synthase subunit c, chloroplastic OS=Amborella trichopoda GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.693e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_AETGR (ATP synthase subunit c, chloroplastic OS=Aethionema grandiflora GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.693e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_AETCO (ATP synthase subunit c, chloroplastic OS=Aethionema cordifolium GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.693e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_ADICA (ATP synthase subunit c, chloroplastic OS=Adiantum capillus-veneris GN=atpH PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.693e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_ACOCL (ATP synthase subunit c, chloroplastic OS=Acorus calamus GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.693e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
The following BLAST results are available for this feature:
BLAST of DR404322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPH_CARPA3.693e-2580.25ATP synthase subunit c, chloroplastic OS=Carica pa... [more]
ATPH_CALFG3.693e-2580.25ATP synthase subunit c, chloroplastic OS=Calycanth... [more]
ATPH_BUXMI3.693e-2580.25ATP synthase subunit c, chloroplastic OS=Buxus mic... [more]
ATPH_BARVE3.693e-2580.25ATP synthase subunit c, chloroplastic OS=Barbarea ... [more]
ATPH_ANTFO3.693e-2580.25ATP synthase subunit c, chloroplastic OS=Anthocero... [more]
ATPH_AMBTC3.693e-2580.25ATP synthase subunit c, chloroplastic OS=Amborella... [more]
ATPH_AETGR3.693e-2580.25ATP synthase subunit c, chloroplastic OS=Aethionem... [more]
ATPH_AETCO3.693e-2580.25ATP synthase subunit c, chloroplastic OS=Aethionem... [more]
ATPH_ADICA3.693e-2580.25ATP synthase subunit c, chloroplastic OS=Adiantum ... [more]
ATPH_ACOCL3.693e-2580.25ATP synthase subunit c, chloroplastic OS=Acorus ca... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245P12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245P12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404322 ID=DR404322; Name=DR404322; organism=Citrus sinensis; type=EST; length=722bp
GGGGGGTTCAATAATAATATTATTANNNCGCCAATTNNNNGTTCTTAGTT
ACTTCGGCTGGGCGAATCCTAGTGACGGAATAATTAAGTCATAATTTATT
GGACGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATTTTAGTGCG
AGGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCT
GGGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTAC
TGCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGAGGCAGAGG
GAAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTA
ACAATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTT
TGTTTAATCCTAGAAATAGGAAGGGCAATTTACTTATTTTTTTTCTCTTA
TTTATTATATCCGTGTTTCTGGCTTTTTTGAATTCTATCAAGATTTAACT
CCTCCAATTGGAAGGACTGATTTGAGGATGGGGAATTAGGATAGGCATAC
CAGTTCGCCTTTTTCTTTCCCTTTCTTAGTCTAAAGGAAACCCTCTTTTT
AAGTGATGCTGCAACAAACNGAGGGGTTTTGCAATGGACAGGAGTCCCGG
CCCCNNNTNCTAATAAGTATCCCTCTTATCGGGAATCCCCAATTGCCAAT
TCAAAGAAAGGATTTCGAAATC
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