DR404322

Overview
NameDR404322
Unique NameDR404322
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4081 contig Csv1_Contig4081:763..1483. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_ACOAM (ATP synthase subunit c, chloroplastic OS=Acorus americanus GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.693e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_OLIPU (ATP synthase subunit c, chloroplastic OS=Olimarabidopsis pumila GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.824e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_DRANE (ATP synthase subunit c, chloroplastic OS=Draba nemorosa GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.824e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_CRUWA (ATP synthase subunit c, chloroplastic OS=Crucihimalaya wallichii GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.824e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_CAPBU (ATP synthase subunit c, chloroplastic OS=Capsella bursa-pastoris GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.824e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_ARATH (ATP synthase subunit c, chloroplastic OS=Arabidopsis thaliana GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.824e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_ARAHI (ATP synthase subunit c, chloroplastic OS=Arabis hirsuta GN=atpH PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.824e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_WELMI (ATP synthase subunit c, chloroplastic OS=Welwitschia mirabilis GN=atpH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.300e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQALEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_SOYBN (ATP synthase subunit c, chloroplastic OS=Glycine max GN=atpH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.300e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_PHAVU (ATP synthase subunit c, chloroplastic OS=Phaseolus vulgaris GN=atpH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.300e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
The following BLAST results are available for this feature:
BLAST of DR404322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPH_ACOAM3.693e-2580.25ATP synthase subunit c, chloroplastic OS=Acorus am... [more]
ATPH_OLIPU4.824e-2579.01ATP synthase subunit c, chloroplastic OS=Olimarabi... [more]
ATPH_DRANE4.824e-2579.01ATP synthase subunit c, chloroplastic OS=Draba nem... [more]
ATPH_CRUWA4.824e-2579.01ATP synthase subunit c, chloroplastic OS=Crucihima... [more]
ATPH_CAPBU4.824e-2579.01ATP synthase subunit c, chloroplastic OS=Capsella ... [more]
ATPH_ARATH4.824e-2579.01ATP synthase subunit c, chloroplastic OS=Arabidops... [more]
ATPH_ARAHI4.824e-2579.01ATP synthase subunit c, chloroplastic OS=Arabis hi... [more]
ATPH_WELMI6.300e-2579.01ATP synthase subunit c, chloroplastic OS=Welwitsch... [more]
ATPH_SOYBN6.300e-2579.01ATP synthase subunit c, chloroplastic OS=Glycine m... [more]
ATPH_PHAVU6.300e-2579.01ATP synthase subunit c, chloroplastic OS=Phaseolus... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245P12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245P12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404322 ID=DR404322; Name=DR404322; organism=Citrus sinensis; type=EST; length=722bp
GGGGGGTTCAATAATAATATTATTANNNCGCCAATTNNNNGTTCTTAGTT
ACTTCGGCTGGGCGAATCCTAGTGACGGAATAATTAAGTCATAATTTATT
GGACGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATTTTAGTGCG
AGGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCT
GGGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTAC
TGCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGAGGCAGAGG
GAAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTA
ACAATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTT
TGTTTAATCCTAGAAATAGGAAGGGCAATTTACTTATTTTTTTTCTCTTA
TTTATTATATCCGTGTTTCTGGCTTTTTTGAATTCTATCAAGATTTAACT
CCTCCAATTGGAAGGACTGATTTGAGGATGGGGAATTAGGATAGGCATAC
CAGTTCGCCTTTTTCTTTCCCTTTCTTAGTCTAAAGGAAACCCTCTTTTT
AAGTGATGCTGCAACAAACNGAGGGGTTTTGCAATGGACAGGAGTCCCGG
CCCCNNNTNCTAATAAGTATCCCTCTTATCGGGAATCCCCAATTGCCAAT
TCAAAGAAAGGATTTCGAAATC
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