DR404322

Overview
NameDR404322
Unique NameDR404322
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4081 contig Csv1_Contig4081:763..1483. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_LOTJA (ATP synthase subunit c, chloroplastic OS=Lotus japonicus GN=atpH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.300e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_GNEPA (ATP synthase subunit c, chloroplastic OS=Gnetum parvifolium GN=atpH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.300e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQALEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_WHEAT (ATP synthase subunit c, chloroplastic OS=Triticum aestivum GN=atpH PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_STAPU (ATP synthase subunit c, chloroplastic OS=Staurastrum punctulatum GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPVISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_SPIOL (ATP synthase subunit c, chloroplastic OS=Spinacia oleracea GN=atpH PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_SORBI (ATP synthase subunit c, chloroplastic OS=Sorghum bicolor GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_SOLBU (ATP synthase subunit c, chloroplastic OS=Solanum bulbocastanum GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_SACOF (ATP synthase subunit c, chloroplastic OS=Saccharum officinarum GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_SACHY (ATP synthase subunit c, chloroplastic OS=Saccharum hybrid GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_ORYSJ (ATP synthase subunit c, chloroplastic OS=Oryza sativa subsp. japonica GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
The following BLAST results are available for this feature:
BLAST of DR404322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPH_LOTJA6.300e-2579.01ATP synthase subunit c, chloroplastic OS=Lotus jap... [more]
ATPH_GNEPA6.300e-2579.01ATP synthase subunit c, chloroplastic OS=Gnetum pa... [more]
ATPH_WHEAT8.228e-2579.01ATP synthase subunit c, chloroplastic OS=Triticum ... [more]
ATPH_STAPU8.228e-2579.01ATP synthase subunit c, chloroplastic OS=Staurastr... [more]
ATPH_SPIOL8.228e-2579.01ATP synthase subunit c, chloroplastic OS=Spinacia ... [more]
ATPH_SORBI8.228e-2579.01ATP synthase subunit c, chloroplastic OS=Sorghum b... [more]
ATPH_SOLBU8.228e-2579.01ATP synthase subunit c, chloroplastic OS=Solanum b... [more]
ATPH_SACOF8.228e-2579.01ATP synthase subunit c, chloroplastic OS=Saccharum... [more]
ATPH_SACHY8.228e-2579.01ATP synthase subunit c, chloroplastic OS=Saccharum... [more]
ATPH_ORYSJ8.228e-2579.01ATP synthase subunit c, chloroplastic OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245P12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245P12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404322 ID=DR404322; Name=DR404322; organism=Citrus sinensis; type=EST; length=722bp
GGGGGGTTCAATAATAATATTATTANNNCGCCAATTNNNNGTTCTTAGTT
ACTTCGGCTGGGCGAATCCTAGTGACGGAATAATTAAGTCATAATTTATT
GGACGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATTTTAGTGCG
AGGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCT
GGGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTAC
TGCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGAGGCAGAGG
GAAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTA
ACAATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTT
TGTTTAATCCTAGAAATAGGAAGGGCAATTTACTTATTTTTTTTCTCTTA
TTTATTATATCCGTGTTTCTGGCTTTTTTGAATTCTATCAAGATTTAACT
CCTCCAATTGGAAGGACTGATTTGAGGATGGGGAATTAGGATAGGCATAC
CAGTTCGCCTTTTTCTTTCCCTTTCTTAGTCTAAAGGAAACCCTCTTTTT
AAGTGATGCTGCAACAAACNGAGGGGTTTTGCAATGGACAGGAGTCCCGG
CCCCNNNTNCTAATAAGTATCCCTCTTATCGGGAATCCCCAATTGCCAAT
TCAAAGAAAGGATTTCGAAATC
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