DR404322

Overview
NameDR404322
Unique NameDR404322
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4081 contig Csv1_Contig4081:763..1483. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_ORYSI (ATP synthase subunit c, chloroplastic OS=Oryza sativa subsp. indica GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_ORYSA (ATP synthase subunit c, chloroplastic OS=Oryza sativa GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_ORYNI (ATP synthase subunit c, chloroplastic OS=Oryza nivara GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_MAIZE (ATP synthase subunit c, chloroplastic OS=Zea mays GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_LOLPR (ATP synthase subunit c, chloroplastic OS=Lolium perenne GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_HORVU (ATP synthase subunit c, chloroplastic OS=Hordeum vulgare GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_CRYJA (ATP synthase subunit c, chloroplastic OS=Cryptomeria japonica GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLISAASVIAAGL+VGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLSVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_CHAVU (ATP synthase subunit c, chloroplastic OS=Chara vulgaris GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLISAASVIAAGLAVGL+SI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLSSIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_CERDE (ATP synthase subunit c, chloroplastic OS=Ceratophyllum demersum GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLIS+ASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISSASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of DR404322 vs. ExPASy Swiss-Prot
Match: ATPH_BRADI (ATP synthase subunit c, chloroplastic OS=Brachypodium distachyon GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:  162 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 404
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
The following BLAST results are available for this feature:
BLAST of DR404322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPH_ORYSI8.228e-2579.01ATP synthase subunit c, chloroplastic OS=Oryza sat... [more]
ATPH_ORYSA8.228e-2579.01ATP synthase subunit c, chloroplastic OS=Oryza sat... [more]
ATPH_ORYNI8.228e-2579.01ATP synthase subunit c, chloroplastic OS=Oryza niv... [more]
ATPH_MAIZE8.228e-2579.01ATP synthase subunit c, chloroplastic OS=Zea mays ... [more]
ATPH_LOLPR8.228e-2579.01ATP synthase subunit c, chloroplastic OS=Lolium pe... [more]
ATPH_HORVU8.228e-2579.01ATP synthase subunit c, chloroplastic OS=Hordeum v... [more]
ATPH_CRYJA8.228e-2579.01ATP synthase subunit c, chloroplastic OS=Cryptomer... [more]
ATPH_CHAVU8.228e-2579.01ATP synthase subunit c, chloroplastic OS=Chara vul... [more]
ATPH_CERDE8.228e-2579.01ATP synthase subunit c, chloroplastic OS=Ceratophy... [more]
ATPH_BRADI8.228e-2579.01ATP synthase subunit c, chloroplastic OS=Brachypod... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245P12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245P12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404322 ID=DR404322; Name=DR404322; organism=Citrus sinensis; type=EST; length=722bp
GGGGGGTTCAATAATAATATTATTANNNCGCCAATTNNNNGTTCTTAGTT
ACTTCGGCTGGGCGAATCCTAGTGACGGAATAATTAAGTCATAATTTATT
GGACGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATTTTAGTGCG
AGGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCT
GGGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTAC
TGCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGAGGCAGAGG
GAAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTA
ACAATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTT
TGTTTAATCCTAGAAATAGGAAGGGCAATTTACTTATTTTTTTTCTCTTA
TTTATTATATCCGTGTTTCTGGCTTTTTTGAATTCTATCAAGATTTAACT
CCTCCAATTGGAAGGACTGATTTGAGGATGGGGAATTAGGATAGGCATAC
CAGTTCGCCTTTTTCTTTCCCTTTCTTAGTCTAAAGGAAACCCTCTTTTT
AAGTGATGCTGCAACAAACNGAGGGGTTTTGCAATGGACAGGAGTCCCGG
CCCCNNNTNCTAATAAGTATCCCTCTTATCGGGAATCCCCAATTGCCAAT
TCAAAGAAAGGATTTCGAAATC
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