DR404319

Overview
NameDR404319
Unique NameDR404319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR404319 vs. ExPASy Swiss-Prot
Match: H36_STYLE (Histone H3-6 (Fragment) OS=Stylonychia lemnae GN=H3-6 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.674e-38
Identity = 83/114 (72.81%), Postives = 91/114 (79.82%), Query Frame = 2
Query:  110 STGGKAPRKQLATKAARKS--APATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMP 445
            +TGGKAPRK +A K A+KS  A ATGGVKKPHRFRPGTVALREIR++QKSTELLIRKLPFQRLVREIAQ++K+DLRF                 GLFEDTNLCAIHAKRVTIMP
Sbjct:    1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMP 114          
BLAST of DR404319 vs. ExPASy Swiss-Prot
Match: H33L1_CAEEL (Histone H3.3-like type 1 OS=Caenorhabditis elegans GN=his-70 PE=2 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.674e-38
Identity = 85/127 (66.93%), Postives = 95/127 (74.80%), Query Frame = 2
Query:   80 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 460
            MARTK TARKS GGKAPRK LATKAARK  P  G VKK  R+RP + AL+EIRKYQKSTELL+RKLPFQRLVRE+AQ+   ++RF                 GLFEDTNLCAIHAKRVTIMPKD+Q+
Sbjct:    1 MARTKHTARKSFGGKAPRKSLATKAARKVFPVDGQVKK--RYRPSSNALKEIRKYQKSTELLVRKLPFQRLVREVAQEIMPNVRFQSAAIQALHEAAEAYLIGLFEDTNLCAIHAKRVTIMPKDMQV 125          
BLAST of DR404319 vs. ExPASy Swiss-Prot
Match: H31_STYLE (Histone H3-1 (Fragment) OS=Stylonychia lemnae GN=H3-1 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.186e-38
Identity = 83/114 (72.81%), Postives = 91/114 (79.82%), Query Frame = 2
Query:  110 STGGKAPRKQLATKAARKSAPA--TGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMP 445
            +TG KAPR+QLA KAARK+A    +GGVKKPHRFRPGTVALREIRK+QKSTELLIRKLPFQRLVREIAQ++K+DLRF                 GLFEDTNLCAIHAKRVTIMP
Sbjct:    1 NTGAKAPREQLANKAARKTAQVAQSGGVKKPHRFRPGTVALREIRKFQKSTELLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYMVGLFEDTNLCAIHAKRVTIMP 114          
BLAST of DR404319 vs. ExPASy Swiss-Prot
Match: H3L4_ARATH (Histone H3-like 4 OS=Arabidopsis thaliana GN=At5g12910 PE=2 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 2.855e-38
Identity = 83/135 (61.48%), Postives = 100/135 (74.07%), Query Frame = 2
Query:   80 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 484
            MAR+ QTARK+TGGKAP    A +  + S P    +KKP+R++PGTVALREIRKYQK+T+L+IRKLPFQRLV+EIAQ  K DLRF                 G+FEDTNLCA+HAKR TIMPKDIQLA+R+RG+R
Sbjct:    1 MARSNQTARKATGGKAPH--FAMRVWQHSTPP---LKKPYRYKPGTVALREIRKYQKTTDLVIRKLPFQRLVKEIAQSLKADLRFQTGAVSALQEAAEAFMVGMFEDTNLCAMHAKRSTIMPKDIQLAKRLRGDR 130          
BLAST of DR404319 vs. ExPASy Swiss-Prot
Match: H33_STYLE (Histone H3-3 (Fragment) OS=Stylonychia lemnae GN=H3-3 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.729e-38
Identity = 83/114 (72.81%), Postives = 89/114 (78.07%), Query Frame = 2
Query:  110 STGGKAPRKQLATKAARKS--APATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMP 445
            +TGGKAPRK +A K A+KS  A ATGGVKKPHRFRPGTVALREIR++QKSTELLIRKLPFQRLVREIA +FK DLRF                 GLFEDTNLCAIHAKRVTIMP
Sbjct:    1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIASEFKNDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMP 114          
BLAST of DR404319 vs. ExPASy Swiss-Prot
Match: H35_STYLE (Histone H3-5 (Fragment) OS=Stylonychia lemnae GN=H3-5 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.361e-38
Identity = 83/114 (72.81%), Postives = 89/114 (78.07%), Query Frame = 2
Query:  110 STGGKAPRKQLATKAARKSAP--ATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMP 445
            +TG KAPRKQLA KAARKS    A  GVKKPHRFRPGTVALREIR++QKSTELLIRKLPFQRLVREIAQ++K+DLRF                 GLFEDTNLCAIHAKRVTIMP
Sbjct:    1 NTGAKAPRKQLANKAARKSTNVNAVSGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIAQEYKSDLRFQSQAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP 114          
BLAST of DR404319 vs. ExPASy Swiss-Prot
Match: H38_STYLE (Histone H3-8 (Fragment) OS=Stylonychia lemnae GN=H3-8 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.851e-37
Identity = 80/113 (70.80%), Postives = 87/113 (76.99%), Query Frame = 2
Query:  110 STGGKAPRKQLATKAARKSA-PATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMP 445
            +TG KAPRK LA KAARK+A PA  G+KKPHR+RPGTVALREIRKYQKST+LLIRKLPFQRLVREIA ++K DLRF                 GLFEDTNLCAIH KRVTIMP
Sbjct:    1 NTGAKAPRKHLANKAARKTAAPANAGIKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIASEYKNDLRFQSSAVLALQEAAEAYMIGLFEDTNLCAIHGKRVTIMP 113          
BLAST of DR404319 vs. ExPASy Swiss-Prot
Match: H39_STYLE (Histone H3-2 (Fragment) OS=Stylonychia lemnae GN=H3-2 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.123e-37
Identity = 82/114 (71.93%), Postives = 88/114 (77.19%), Query Frame = 2
Query:  110 STGGKAPRKQLATKAARKS--APATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMP 445
            +TGGKAPRK +A K A+KS  A ATGGVKKPHRFRPGTVALREIR++QKSTELLIRKLPFQRLVREIA +FK DLRF                 GLFEDTNL AIHAKRVTIMP
Sbjct:    1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIASEFKNDLRFQSSAVLALQEASEAYLVGLFEDTNLAAIHAKRVTIMP 114          
BLAST of DR404319 vs. ExPASy Swiss-Prot
Match: H37_STYLE (Histone H3-7 (Fragment) OS=Stylonychia lemnae GN=H3-7 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.123e-37
Identity = 82/114 (71.93%), Postives = 88/114 (77.19%), Query Frame = 2
Query:  110 STGGKAPRKQLATKAARKS--APATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMP 445
            +TGGKAPRK +A K A+KS  A ATGGVKKPHRFRPGTVALREIR++QKSTELLIRKLPFQRLVREIA +FK DLRF                 GLFEDTNL AIHAKRVTIMP
Sbjct:    1 NTGGKAPRKHIAHKQAKKSSAAAATGGVKKPHRFRPGTVALREIRRFQKSTELLIRKLPFQRLVREIASEFKNDLRFQSSAVLALQEASEAYLVGLFEDTNLAAIHAKRVTIMP 114          
BLAST of DR404319 vs. ExPASy Swiss-Prot
Match: H31_ENCCU (Histone H3.1 OS=Encephalitozoon cuniculi GN=HHT1 PE=3 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 7.278e-34
Identity = 76/144 (52.78%), Postives = 96/144 (66.67%), Query Frame = 2
Query:   80 MARTKQTARKSTGGKAPRKQLATKAARKS-APATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA*ELSD 502
            MARTKQ+ARK+TGGKAPRKQL+ K+ARK  +PA+    K  R+RPG+VAL+EIR+YQKST+ LIR+LPFQR  R + ++    TD+RF                 GLFED  LCA HAKRVT+ PKDI L  ++R      +SD
Sbjct:    1 MARTKQSARKTTGGKAPRKQLSAKSARKGVSPASSAGAKKSRYRPGSVALKEIRRYQKSTDFLIRRLPFQRACRSVVKECSNATDIRFQGPALASIQEALEVYLVGLFEDAMLCAYHAKRVTVFPKDISLVLKLRSRHVKSISD 144          
The following BLAST results are available for this feature:
BLAST of DR404319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H36_STYLE1.674e-3872.81Histone H3-6 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H33L1_CAEEL1.674e-3866.93Histone H3.3-like type 1 OS=Caenorhabditis elegans... [more]
H31_STYLE2.186e-3872.81Histone H3-1 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H3L4_ARATH2.855e-3861.48Histone H3-like 4 OS=Arabidopsis thaliana GN=At5g1... [more]
H33_STYLE3.729e-3872.81Histone H3-3 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H35_STYLE6.361e-3872.81Histone H3-5 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H38_STYLE1.851e-3770.80Histone H3-8 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H39_STYLE4.123e-3771.93Histone H3-2 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H37_STYLE4.123e-3771.93Histone H3-7 (Fragment) OS=Stylonychia lemnae GN=H... [more]
H31_ENCCU7.278e-3452.78Histone H3.1 OS=Encephalitozoon cuniculi GN=HHT1 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAG-PNP1245P08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404319 ID=DR404319; Name=DR404319; organism=Citrus sinensis; type=EST; length=709bp
GGGGATCTCCCCATCTTCCAATTTTCATTCATATTTTAAGATCTCCCAAG
NNNAAAGAAACACTTAATTTCCCAAATCAATGGCCCGCACGAAGCAAACC
GCTCGCAAGTCCACCGGAGGCAAGGCCCCAAGAAAGCAACTGGCGACCAA
GGCGGCAAGGAAATCCGCACCGGCAACCGGAGGAGTGAAGAAGCCTCACA
GGTTCCGTCCAGGAACTGTCGCACTCCGTGAAATCAGGAAGTACCAGAAG
AGCACTGAGCTTCTTATTAGGAAGCTTCCGTTCCAGAGATTGGTGAGGGA
AATCGCTCAGGATTTCAAGACGGATCTGAGGTTCCAGAGCAGCGCTGTTG
CTGCACTTCAGGAGGCTGCTGAGGCTTATCTTGTTGGGCTGTTCGAGGAC
ACCAACCTCTGCGCTATTCATGCTAAGAGGGTCACTATTATGCCCAAGGA
CATTCAGCTTGCTAGGCGGATCAGGGGTGAAAGGGCTTAGGAACTTTCTG
ATTTAATGTATTTTGTTCCTCTTACTTCGATGTTAGTCTTTTGGTCAATA
TTTGGGGTTTAGATTTATGTTTTGGATGTCTATCCGATGGATTAGATCGG
GTCTAGTATGTATCTAAGGTGTTTGTTAAAATGTTTTCGAGGGTTTTTAA
TCTAATAGATAATTAGCCTTTTAATAAAAAAACAAAAAAAAAAAAAAAAA
AAAAAAAAA
back to top