DR404319

Overview
NameDR404319
Unique NameDR404319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1492 contig Csv1_Contig1492:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR404319 vs. ExPASy Swiss-Prot
Match: H3L2_LILLO (Histone H3-like 2 OS=Lilium longiflorum GN=gcH3 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 47/86 (54.65%), Postives = 51/86 (59.30%), Query Frame = 2 
Query:   80 MARTKQTARKSTGGKAPRKQLATKAARKS-APATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF 334
            MAR K TAR STGGKAPRKQLA+KA RK+  P T GVK+P     G                  RKLPFQ LVR+I QD KT LRF
Sbjct:    1 MARMKHTARMSTGGKAPRKQLASKALRKAPPPPTKGVKQPTTTTSGKWRFARFH----------RKLPFQGLVRKIWQDLKTHLRF 76
The following BLAST results are available for this feature:
BLAST of DR404319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3L2_LILLO5.423e-1354.65Histone H3-like 2 OS=Lilium longiflorum GN=gcH3 PE... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245P08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245P08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404319 ID=DR404319; Name=DR404319; organism=Citrus sinensis; type=EST; length=709bp
GGGGATCTCCCCATCTTCCAATTTTCATTCATATTTTAAGATCTCCCAAG
NNNAAAGAAACACTTAATTTCCCAAATCAATGGCCCGCACGAAGCAAACC
GCTCGCAAGTCCACCGGAGGCAAGGCCCCAAGAAAGCAACTGGCGACCAA
GGCGGCAAGGAAATCCGCACCGGCAACCGGAGGAGTGAAGAAGCCTCACA
GGTTCCGTCCAGGAACTGTCGCACTCCGTGAAATCAGGAAGTACCAGAAG
AGCACTGAGCTTCTTATTAGGAAGCTTCCGTTCCAGAGATTGGTGAGGGA
AATCGCTCAGGATTTCAAGACGGATCTGAGGTTCCAGAGCAGCGCTGTTG
CTGCACTTCAGGAGGCTGCTGAGGCTTATCTTGTTGGGCTGTTCGAGGAC
ACCAACCTCTGCGCTATTCATGCTAAGAGGGTCACTATTATGCCCAAGGA
CATTCAGCTTGCTAGGCGGATCAGGGGTGAAAGGGCTTAGGAACTTTCTG
ATTTAATGTATTTTGTTCCTCTTACTTCGATGTTAGTCTTTTGGTCAATA
TTTGGGGTTTAGATTTATGTTTTGGATGTCTATCCGATGGATTAGATCGG
GTCTAGTATGTATCTAAGGTGTTTGTTAAAATGTTTTCGAGGGTTTTTAA
TCTAATAGATAATTAGCCTTTTAATAAAAAAACAAAAAAAAAAAAAAAAA
AAAAAAAAA
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