DR404317

Overview
NameDR404317
Unique NameDR404317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2943 contig Csv1_Contig2943:112..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404317 vs. ExPASy Swiss-Prot
Match: NIA_CUCMA (Nitrate reductase [NADH] OS=Cucurbita maxima PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.186e-14
Identity = 32/76 (42.11%), Postives = 54/76 (71.05%), Query Frame = 1
Query:  151 AKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEI 378
            +  +TL+EV  HN+ +  W+I++G VYD T+FL+DHPGG + +L   G D T++F+ + HS  A++M++ Y +GE+
Sbjct:  543 SNTYTLSEVKKHNSPQSAWIIVHGHVYDCTRFLKDHPGGSDSILINAGTDCTEEFDAI-HSDKAKKMLEDYRIGEL 617          
BLAST of DR404317 vs. ExPASy Swiss-Prot
Match: NIA1_BRANA (Nitrate reductase [NADH], clone PBNBR1405 OS=Brassica napus GN=NIA1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 30/76 (39.47%), Postives = 56/76 (73.68%), Query Frame = 1
Query:  151 AKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEI 378
            +K+++++EV  HN+ +  W+I++G +YD T+FL+DHPGG + +L   G D T++FE + HS  A+++++ Y +GE+
Sbjct:  539 SKMYSMSEVRKHNSAESAWIIVHGHIYDCTRFLKDHPGGSDSILINAGTDCTEEFEAI-HSDKAKKLLEDYRIGEL 613          
BLAST of DR404317 vs. ExPASy Swiss-Prot
Match: NIA3_MAIZE (Nitrate reductase [NADH] 3 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 49/161 (30.43%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  160 FTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVSTIPKKKEYTP----PKQPHYNQDKTSEFI----------------------IRLLQFLVPLA--ILGLAVGIRIYTKSS*CSRLC 558
            FT++EV  H +    W++++G VYD T FL+DHPGG + +L   G D T++F+ + HS  A+E++D Y +G  D+ T    ++ +P    P  P  ++   +  I                      +RL +F +P +  +LGL VG  I+  +S   +LC
Sbjct:  523 FTMSEVRKHASQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKELLDTYRIG--DLVTTGGAEQRSPLELAPSPPIRHEGPAAPVIALSNPREKVPCQLVARTVLSRDVRLFRFALPSSGQVLGLPVGKHIFVCASIDGKLC 680          
BLAST of DR404317 vs. ExPASy Swiss-Prot
Match: NIA_PETHY (Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 40/121 (33.06%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  151 AKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEIDVSTIPKKKEYTPPKQPHYNQDKTSEFIIRLLQFLVPLAILGLAV 513
            +K+++++EV  HN+    W+I++G VYD T+FL+DHPGG + +L   G D T++F+ + HS  A+++++ + +GE+  +       YT    P+ +   +S F      FL P+  L  AV
Sbjct:  535 SKMYSMSEVKKHNSADSAWIIVHGHVYDATRFLKDHPGGIDSILINAGTDCTEEFDAI-HSDKAKKLLEDFRIGELITT------GYTSDSSPNNSVHGSSSF----SGFLAPIKELAPAV 644          
BLAST of DR404317 vs. ExPASy Swiss-Prot
Match: NIA1_ORYSJ (Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. japonica GN=NIA1 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 33/81 (40.74%), Postives = 53/81 (65.43%), Query Frame = 1
Query:  136 MGGGDAKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEI 378
            M   D K FT++EV  H++    W++++G VYD T FL+DHPGG + +L   G D T++F+ + HS  A+ ++D Y +GE+
Sbjct:  536 MNTTDGKQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKALLDTYRIGEL 615          
BLAST of DR404317 vs. ExPASy Swiss-Prot
Match: NIA_CICIN (Nitrate reductase [NADH] OS=Cichorium intybus GN=NIA PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 30/73 (41.10%), Postives = 52/73 (71.23%), Query Frame = 1
Query:  160 FTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEI 378
            FT++EV  HN+    W++++G +YD T FL+DHPGG + +L   G D T++F+ + HS  A++++++Y VGE+
Sbjct:  537 FTMSEVKKHNSADSAWIVVHGHIYDCTSFLKDHPGGSDSILLNAGTDCTEEFDAI-HSDKAKKLLEEYRVGEL 608          
BLAST of DR404317 vs. ExPASy Swiss-Prot
Match: NIA1_ARATH (Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana GN=NIA1 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 30/76 (39.47%), Postives = 54/76 (71.05%), Query Frame = 1
Query:  151 AKVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEI 378
            +K+++++EV  HN     W+I++G +YD T+FL+DHPGG + +L   G D T++FE + HS  A+++++ Y +GE+
Sbjct:  545 SKMYSISEVRKHNTADSAWIIVHGHIYDCTRFLKDHPGGTDSILINAGTDCTEEFEAI-HSDKAKKLLEDYRIGEL 619          
BLAST of DR404317 vs. ExPASy Swiss-Prot
Match: NIA1_MAIZE (Nitrate reductase [NADH] (Fragment) OS=Zea mays PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 32/75 (42.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  154 KVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEI 378
            K FT++EV  H + +  W++++G VYD TKFL+DHPGG + +L   G D T++F+ + HS  A+ ++D Y +GE+
Sbjct:  250 KEFTMSEVRKHASQESAWIVVHGHVYDCTKFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKALLDTYRIGEL 323          
BLAST of DR404317 vs. ExPASy Swiss-Prot
Match: NIA7_HORVU (Nitrate reductase [NAD(P)H] OS=Hordeum vulgare GN=NAR-7 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 49/164 (29.88%), Postives = 78/164 (47.56%), Query Frame = 1
Query:  160 FTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEI--------------DVSTIPKKKEYTPPKQP---------------HYNQDKTSEFIIRLLQFLVPL--AILGLAVGIRIYTKSS*CSRLC 558
            FT++EV  H +    W++++G VYD T FL+DHPGG + +L   G D T++F+ + HS  AR +++ Y VGE+              D++ I +      P+ P                    K+    +RL +F +P     LGL VG  +Y  +S   +LC
Sbjct:  518 FTMSEVRRHASKDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGSDCTEEFDAI-HSAKARGLLEMYRVGELIVTGNDYSPQSSNADLAAIVEAPAVVVPRLPASAVALANPREKVRCRLVDKKSMSHNVRLFRFALPSPDQKLGLPVGKHVYVCASTGGKLC 680          
BLAST of DR404317 vs. ExPASy Swiss-Prot
Match: NIA2_HORVU (Nitrate reductase [NADH] (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 31/75 (41.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query:  154 KVFTLAEVSDHNNMKDCWLIINGKVYDVTKFLEDHPGGDEVLLSATGKDATDDFEDVGHSPSAREMMDQYYVGEI 378
            K FT++EV  H + +  W++++G VYD T FL+DHPGG + +L   G D T++F+ + HS  A+ ++D Y +GE+
Sbjct:  536 KQFTMSEVRKHGSKESAWIVVHGHVYDCTAFLKDHPGGADSILINAGSDCTEEFDAI-HSDKAKALLDTYRIGEL 609          
The following BLAST results are available for this feature:
BLAST of DR404317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
NIA_CUCMA1.186e-1442.11Nitrate reductase [NADH] OS=Cucurbita maxima PE=2 ... [more]
NIA1_BRANA1.549e-1439.47Nitrate reductase [NADH], clone PBNBR1405 OS=Brass... [more]
NIA3_MAIZE2.023e-1430.43Nitrate reductase [NADH] 3 OS=Zea mays PE=3 SV=1[more]
NIA_PETHY2.642e-1433.06Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA... [more]
NIA1_ORYSJ3.450e-1440.74Nitrate reductase [NADH] 1 OS=Oryza sativa subsp. ... [more]
NIA_CICIN4.506e-1441.10Nitrate reductase [NADH] OS=Cichorium intybus GN=N... [more]
NIA1_ARATH4.506e-1439.47Nitrate reductase [NADH] 1 OS=Arabidopsis thaliana... [more]
NIA1_MAIZE5.885e-1442.67Nitrate reductase [NADH] (Fragment) OS=Zea mays PE... [more]
NIA7_HORVU7.686e-1429.88Nitrate reductase [NAD(P)H] OS=Hordeum vulgare GN=... [more]
NIA2_HORVU1.712e-1341.33Nitrate reductase [NADH] (Fragment) OS=Hordeum vul... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245P04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245P04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404317 ID=DR404317; Name=DR404317; organism=Citrus sinensis; type=EST; length=680bp
GGGGAGCCCGCAGTTTTATTTTCAGTGTCCTGACTTGAGTTTCAAAGCAC
ACCCATCTCCTTATATCTCTTTTCCCTTTTATCATTACCAGCTTCGGTTA
CGTACATTGTTGAAGAGAGCTGAAGGGAGCATACAATGGGTGGTGGTGAT
GCCAAGGTCTTCACTTTGGCTGAAGTATCTGATCACAACAACATGAAAGA
TTGTTGGCTCATCATCAATGGCAAGGTGTATGACGTGACAAAATTCTTGG
AAGATCATCCTGGAGGTGATGAAGTTTTGCTGTCTGCAACAGGGAAGGAT
GCCACGGATGACTTTGAAGATGTGGGTCATAGTCCGAGTGCCAGAGAAAT
GATGGACCAGTACTACGTCGGAGAGATTGATGTATCGACCATCCCAAAGA
AAAAGGAGTATACACCTCCAAAGCAGCCTCACTACAACCAGGACAAGACA
TCAGAGTTCATCATCAGGCTTCTCCAATTCCTTGTGCCGCTAGCAATCCT
GGGGTTGGCCGTCGGCATCCGGATTTATACAAAATCATCTTAATGTTCTA
GACTATGTTCTCATAACAGACAATTTGTGTCATCTTAATGTTCTAGATTA
TGTTATCATAACAGACAATTTGTGTTTTGTTAATGAAACTTTCTTAGTTC
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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