CX070293

Overview
NameCX070293
Unique NameCX070293
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX070293 vs. ExPASy Swiss-Prot
Match: K0644_HUMAN (Leucine-rich repeat-containing protein KIAA0644 OS=Homo sapiens GN=KIAA0644 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.658e-11
Identity = 54/175 (30.86%), Postives = 82/175 (46.86%), Query Frame = -1 
Query:  187 VGLVPDNLFSKLPNLVYLNASYNNLTGFLPETLLSNSDKLELLDLSYNNLTGSISGFSLNENSCNSLLHLDLSQNHIMDVIPSSLSNCTKLKILNLSFNLLAGEIPRTFGQLSSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHNNITGSFPVTLSSCSWLQLLDLSNNNIS 711
            +G +PD +F+ L NL+YL+   N +  FL +   +   KL  L+LS N L  S+   +       SL  L LS N +  + P    +  +L +L+L  N L    P  F  L +L+ L L  N ++  +P+ L     SL  L L  N ++   P T      L+ L L NN +S
Sbjct:  167 LGALPDAVFAPLGNLLYLHLESNRIR-FLGKNAFAQLGKLRFLNLSANELQPSLR-HAATFAPLRSLSSLILSANSLQHLGPRIFQHLPRLGLLSLRGNQLTHLAPEAFWGLEALRELRLEGNRLS-QLPTALLEPLHSLEALDLSGNELSALHPATFGHLGRLRELSLRNNALS 338
The following BLAST results are available for this feature:
BLAST of CX070293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
K0644_HUMAN8.658e-1130.86Leucine-rich repeat-containing protein KIAA0644 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15H09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15H09-P17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070293 ID=CX070293; Name=CX070293; organism=Citrus sinensis; type=EST; length=831bp
TGATGAAACTCCTGGACATATGTCTGGTGGGATGATTCCTGAAACCCTGT
TGGAACTGAAATCAACAATCCGTAGAGTCTTGCATGATGAAATGGAATCA
GGAAATGATCCAGAGATCATGTTGTTACTCAAAATCAAGCTCTCCAATGA
TCCAAGATTTTCCAGGACGGAGTCTGGAAAGGGACCTGAGATATTGTTAT
TAGACAAATCAAGTAATTGCAACCAGGAGCATGAAGACAAGGTGACTGGA
AAAGAGCCGGTTATGTTGTTGTGAGGGAGCTTAAGCTCAAGAAGAGAATC
ACATGCATTTCCCAACTCAGAAGGGATCCAACCAGTGATATGATTATTAG
AGAGATCCAATCTTTGTAAACTACTCAGCTGACCAAATGTTCTTGGGATC
TCCCCTGCGAGCAAATTGAATGATAAATTCAAAATTTTGAGTTTTGTGCA
ATTTGAAAGAGAGGAAGGGATAACATCCATTATATGATTTTGTGACAAGT
CTAGATGCAACAAGGAATTGCAAGAATTCTCATTCAAACTGAAACCGGAA
ATGGATCCTGTTAAGTTGTTGTAAGACAAGTCAAGAAGCTCAAGTTTATC
AGAATTTGATAAAAGGGTCTCTGGTAGAAACCCTGTCAAGTTGTTGTAAG
AAGCATTTAGGTAGACAAGATTTGGAAGTTTTGAGAAAAGATTGTCAGGG
ACCAGGCCTACAAGACCAGCTGAAGATAACTCAAGCTGTTTCAAACCAAA
TGGAAGTTGAAGCAAAGAAGTTGAATTGAGAGTAAATAAATTGGAAGACA
ATTTAAGAACAGACAACATATCTAGAGAGGC
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