CX070293

Overview
NameCX070293
Unique NameCX070293
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070293 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.202e-14
Identity = 56/205 (27.32%), Postives = 98/205 (47.80%), Query Frame = -1
Query:   19 SNSDKLELLDLSYNNLTGSISGFSLNENSCNSLLHLDLSQN-HIMDVIPSSLSNCTKLKILNLSFNLLAGEIPRTFGQLSSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHNNITGSFPVTL-SSCSWLQLL------DLSNNNISGPFPDSVLENLGSLESLILSNNMISGSFPDSISSCKTLRIVDFSSNRVSGIIPPDI 609
            +N +++  + L+  NL G +       ++ + L  LDL+ N  +   +P+++ N  KL  L+L      G IP + G L  L RL L+ N  +G IP+ +G     L    +  N + G  PV+  +S   L +L         NN +SG  P+ +  +  +L  ++   N  +GS P+S+   + L ++    NR+SG IP  +
Sbjct:   65 NNDNRVVSISLTNRNLKGKLP---TEISTLSELQTLDLTGNPELSGPLPANIGNLRKLTFLSLMGCAFNGPIPDSIGNLEQLTRLSLNLNKFSGTIPASMGRL-SKLYWFDIADNQLEGKLPVSDGASLPGLDMLLQTGHFHFGNNKLSGEIPEKLFSSEMTLLHVLFDGNQFTGSIPESLGLVQNLTVLRLDRNRLSGDIPSSL 265          

HSP 2 Score: 77.411 bits (189), Expect = 1.093e-13
Identity = 69/247 (27.94%), Postives = 115/247 (46.56%), Query Frame = -1
Query:   25 LKQLELSSAGLVGLVPDNLFSKLPNLVYLNASYNNLTGFLPETLLSNSDKLELL------DLSYNNLTGSISGFSLNENSCNSLLHLDLSQNHIMDVIPSSLSNCTKLKILNLSFNLLAGEIPRTFGQLSSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHNNITGS-FPVTLSSCSWLQLLDLSNNNISGPFPDSVLENLGSLESLILSNNMISGSFPDSISSCKTLRIVDFSSNRVSGIIPP 744
            L +L L+     G +P ++  +L  L + + + N L G LP +  ++   L++L          N L+G I     +     +LLH+    N     IP SL     L +L L  N L+G+IP +   L++LQ L LS+N  TG +P+    +  SL  L + +N +  S  P  +   + L  L L +  + GP P S+   L  L+++ L +N+I+ +     +  K L  VD   N ++G   P
Sbjct:  143 LTRLSLNLNKFSGTIPASM-GRLSKLYWFDIADNQLEGKLPVSDGASLPGLDMLLQTGHFHFGNNKLSGEIPEKLFSSEM--TLLHVLFDGNQFTGSIPESLGLVQNLTVLRLDRNRLSGDIPSSLNNLTNLQELHLSDNKFTGSLPNL--TSLTSLYTLDVSNNPLALSPVPSWIPFLNSLSTLRLEDIQLDGPVPTSLFSPL-QLQTVSLKHNLINTTLDLGTNYSKQLDFVDLRDNFITGYKSP 383          
BLAST of CX070293 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.202e-14
Identity = 54/163 (33.13%), Postives = 82/163 (50.31%), Query Frame = -1
Query:   76 SISGFSLNENSCNS---LLHLDLSQNHIMDVIPSSLSNCTKLKILNLSFNLLAGEIPRTFGQLSSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHNNITGSFPVTLSSCSWLQLLDLSNNNISGPFPDSVLENLGSLESLILSNNMISGSFPDSISSCKT 555
            S+   + N   C+S   ++ L+++   +  ++ +S+   T L  L L  N L G IP   GQLS L+ LDLS N  +G IP+ LG     L  L+L  N ++G  P  ++  S L  LDLS NN+SGP P     N+ + +  I+ N  + G     + S  T
Sbjct:   64 SVDPCTWNMVGCSSEGFVVSLEMASKGLSGILSTSIGELTHLHTLLLQNNQLTGPIPSELGQLSELETLDLSGNRFSGEIPASLG-FLTHLNYLRLSRNLLSGQVPHLVAGLSGLSFLDLSFNNLSGPTP-----NISAKDYRIVGNAFLCGPASQELCSDAT 220          
BLAST of CX070293 vs. ExPASy Swiss-Prot
Match: SRF3_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.875e-14
Identity = 60/206 (29.13%), Postives = 102/206 (49.51%), Query Frame = -1
Query:   73 LFSKLPNLVYLNASYNNLTGFLPETLLSNSDKLELLDLSYNNLTGSISGFSLNENSCNSLLHLDLSQNHIMDVIPSSLSNCTKLKILNLSFNLLAGEIPRTFGQLSSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHNNITGSFPVTLSSCSWLQLLDLSNNNISGPFPDSVLENLGSLESLILSNNMISGSFPDSISSCKTL 690
            +   + +++ +  +  NL G L + L +    +  +D S N + GSI           +L H  LS N     IP SL   + L  ++L+ NLL+GE+P  F  L  L  LD+S+N+I+G +P  + N   +L  L++ +N ++G+  V       LQ L++ NN  SGP PD +L    S+   +   N  + +  +S S+  +L
Sbjct:   69 IICNVSDIISITVNAANLQGELGDNL-AKFTSIRGIDFSNNRIGGSIPS-----TLPVTLQHFFLSANQFTGSIPESLGTLSFLNDMSLNDNLLSGELPDVFQNLVGLINLDISSNNISGTLPPSMENLL-TLTTLRVQNNQLSGTLDVLQGLP--LQDLNIENNLFSGPIPDKLL----SIPKFLHEGNPFNATMINSTSTAPSL 261          

HSP 2 Score: 77.411 bits (189), Expect = 1.093e-13
Identity = 52/150 (34.67%), Postives = 84/150 (56.00%), Query Frame = -1
Query:    7 CTKLKILNLSFNL--LAGEIPRTFGQLSSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHNNITGSFPVTLSSCSWLQLLDLSNNNISGPFPDSVLENLGSLESLILSNNMISGSFPDSISSCKTLRIVDFSSNRVSGIIPPDICPGV 450
            C    I++++ N   L GE+     + +S++ +D SNN I G IPS L     +L    L  N  TGS P +L + S+L  + L++N +SG  PD V +NL  L +L +S+N ISG+ P S+ +  TL  +   +N++SG +  D+  G+
Sbjct:   71 CNVSDIISITVNAANLQGELGDNLAKFTSIRGIDFSNNRIGGSIPSTLPV---TLQHFFLSANQFTGSIPESLGTLSFLNDMSLNDNLLSGELPD-VFQNLVGLINLDISSNNISGTLPPSMENLLTLTTLRVQNNQLSGTL--DVLQGL 214          
BLAST of CX070293 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.755e-14
Identity = 59/165 (35.76%), Postives = 82/165 (49.70%), Query Frame = -1
Query:  121 LLSNSDKLELLDLSYNNLTGSISGFSLNENSCNSLLHLDLSQNHIMDVIPSSLSNCTKLKILNLSFNLLAGEIPRTFGQLSSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHNNITGSFPVTLSSCSWLQLLDLSNNNISGPFPDSVLENLGSLESLILSNN 615
            LLSN   L   DLS NNL G+I  + L  N  N    LD S+N +   +P SLS    L+ +NL  N L GE+P  F +LS L+ LD S N ++G +P    N   SL +L L  N  TG   V  +    +  L++ +N   G  P+     L  ++SL+   N
Sbjct:   87 LLSNLKSLTTFDLSKNNLKGNIP-YQLPPNIAN----LDFSENELDGNVPYSLSQMKNLQSINLGQNKLNGELPDMFQKLSKLETLDFSLNKLSGKLPQSFAN-LTSLKKLHLQDNRFTGDINVLRNLA--IDDLNVEDNQFEGWIPN----ELKDIDSLLTGGN 239          
BLAST of CX070293 vs. ExPASy Swiss-Prot
Match: ROCO5_DICDI (Probable serine/threonine-protein kinase roco5 OS=Dictyostelium discoideum GN=roco5 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.755e-14
Identity = 75/239 (31.38%), Postives = 120/239 (50.21%), Query Frame = -1
Query:   40 LKQLELSSAGLVGLVPDNLFSKLPNLVYLNASYNNLTGFLPETLLSNSDKLELLDLSYNNLTGSISGFSLNENSCNSLLHLDLSQNHIMDVIPSSLSNCTKLKILNLS---FNLLAGEIPRTFGQLSSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHNNI-TGSFPVTLSSCSWLQLLDLSNNNISGPFPDSVLENLGSLESLILSNNMISGSFPDSISSCKTLRIVDFSSNRVS 744
            LK+L L     +  +P ++  +L NL  L+ S N L+    E  +S   +L+LL++S+NNL    S   +   +   L HLD+S N I  +  +SLS    LK+L +    FN L  EI   F +L SL+   ++ +     I   +  A  ++   KL  ++    + P+ + S S L  LDL+NN I    P   +  L SL++L LSNN I  S P  +S   TL++++ + N +S
Sbjct:  987 LKELYLDH-NCISSIPVSILKELKNLQILDLSNNQLSSLPSE--ISEMKELKLLNVSHNNL----SSLPIELGTLCKLNHLDISFNFIETINVNSLSQLVNLKVLMMQRNYFNRLPIEI---FTRLKSLESFSIAGSPCFHPIKQRIYEAI-AIKATKLDLSDCGLSALPIEIGSISSLIELDLTNNRIKDLPPQ--IGKLSSLQTLNLSNNAIE-SLPWQLSQLTTLKVLNITGNPIS 1211          
BLAST of CX070293 vs. ExPASy Swiss-Prot
Match: SHOC2_PONAB (Leucine-rich repeat protein SHOC-2 OS=Pongo abelii GN=SHOC2 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.406e-14
Identity = 75/237 (31.65%), Postives = 113/237 (47.68%), Query Frame = -1
Query:   34 LPNLVYLNASYNNLTGFLPETLLSNSDKLELLDLSYNNLTGSISGFSLNENSCNSLLHLDLSQNHIMDVIPSSLSNCTKLKILNLSFNLLAGEIPRTFGQLSSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHN----------------------NITGSFPVTLSSCSWLQLLDLSNNNISGPFPDSVLENLGSLESLILSNNMISGSFPDSISSCKTLRIVDFSSNRVSGI 678
            L NL+ L  S N+LT  LP++L  N  KL +LDL +N L    S         +SL  L L  N I  V    + N +KL +L++  N +  ++P   G+L +L  LD+++N +   +P E+GN C  +  L L HN                      N   + P +L+ CS L+ L+L NNNIS   P+S+L +L  L SL L+ N          S   T+  ++   NR++ I
Sbjct:  145 LVNLMTLALSENSLTS-LPDSL-DNLKKLRMLDLRHNKLREIPSVVY----RLDSLTTLYLRFNRITTV-EKDIKNLSKLSMLSIRENKIK-QLPAEIGELCNLITLDVAHNQLEH-LPKEIGN-CTQITNLDLQHNELLDLPDTIGNLSSLSRLGLRYNRLSAIPRSLAKCSALEELNLENNNIS-TLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKI 370          
BLAST of CX070293 vs. ExPASy Swiss-Prot
Match: SHOC2_HUMAN (Leucine-rich repeat protein SHOC-2 OS=Homo sapiens GN=SHOC2 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.406e-14
Identity = 75/237 (31.65%), Postives = 113/237 (47.68%), Query Frame = -1
Query:   34 LPNLVYLNASYNNLTGFLPETLLSNSDKLELLDLSYNNLTGSISGFSLNENSCNSLLHLDLSQNHIMDVIPSSLSNCTKLKILNLSFNLLAGEIPRTFGQLSSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHN----------------------NITGSFPVTLSSCSWLQLLDLSNNNISGPFPDSVLENLGSLESLILSNNMISGSFPDSISSCKTLRIVDFSSNRVSGI 678
            L NL+ L  S N+LT  LP++L  N  KL +LDL +N L    S         +SL  L L  N I  V    + N +KL +L++  N +  ++P   G+L +L  LD+++N +   +P E+GN C  +  L L HN                      N   + P +L+ CS L+ L+L NNNIS   P+S+L +L  L SL L+ N          S   T+  ++   NR++ I
Sbjct:  145 LVNLMTLALSENSLTS-LPDSL-DNLKKLRMLDLRHNKLREIPSVVY----RLDSLTTLYLRFNRITTV-EKDIKNLSKLSMLSIRENKIK-QLPAEIGELCNLITLDVAHNQLEH-LPKEIGN-CTQITNLDLQHNELLDLPDTIGNLSSLSRLGLRYNRLSAIPRSLAKCSALEELNLENNNIS-TLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKI 370          
BLAST of CX070293 vs. ExPASy Swiss-Prot
Match: SHOC2_BOVIN (Leucine-rich repeat protein SHOC-2 OS=Bos taurus GN=SHOC2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.406e-14
Identity = 75/237 (31.65%), Postives = 113/237 (47.68%), Query Frame = -1
Query:   34 LPNLVYLNASYNNLTGFLPETLLSNSDKLELLDLSYNNLTGSISGFSLNENSCNSLLHLDLSQNHIMDVIPSSLSNCTKLKILNLSFNLLAGEIPRTFGQLSSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHN----------------------NITGSFPVTLSSCSWLQLLDLSNNNISGPFPDSVLENLGSLESLILSNNMISGSFPDSISSCKTLRIVDFSSNRVSGI 678
            L NL+ L  S N+LT  LP++L  N  KL +LDL +N L    S         +SL  L L  N I  V    + N +KL +L++  N +  ++P   G+L +L  LD+++N +   +P E+GN C  +  L L HN                      N   + P +L+ CS L+ L+L NNNIS   P+S+L +L  L SL L+ N          S   T+  ++   NR++ I
Sbjct:  145 LVNLMTLALSENSLTS-LPDSL-DNLKKLRMLDLRHNKLREIPSVVY----RLDSLTTLYLRFNRITTV-EKDIKNLSKLSMLSIRENKIK-QLPAEIGELCNLITLDVAHNQLEH-LPKEIGN-CTQITNLDLQHNELLDLPDTIGNLSSLSRLGLRYNRLSAIPRSLAKCSALEELNLENNNIS-TLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKI 370          
BLAST of CX070293 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.406e-14
Identity = 50/116 (43.10%), Postives = 70/116 (60.34%), Query Frame = -1
Query:   28 SSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHNNITGSFPVTLSSCSWLQLLDLSNNNISGPFPDSVLENLGSLESLILSNNMISGSFPDSISSCKTLRIVDFSSNRVSGIIP 375
            + + R+DL N  ++G +  ELG   + L  L+L  NNITG  P  L     L  LDL  N+ISGP P S L  LG L  L L+NN +SG  P +++S + L+++D S+NR+SG IP
Sbjct:   75 NKVTRVDLGNAKLSGKLVPELGQLLN-LQYLELYSNNITGEIPEELGDLVELVSLDLYANSISGPIPSS-LGKLGKLRFLRLNNNSLSGEIPMTLTSVQ-LQVLDISNNRLSGDIP 187          

HSP 2 Score: 74.3294 bits (181), Expect = 9.250e-13
Identity = 47/123 (38.21%), Postives = 65/123 (52.85%), Query Frame = -1
Query:  175 FSLNENSCNSLLHLDLSQNHIMDVIPSSLSNCTKLKILNLSFNLLAGEIPRTFGQLSSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHNNITGSFPVTLSSCSWLQLLDLSNNNISGPFP 543
            F +  N  N +  +DL    +   +   L     L+ L L  N + GEIP   G L  L  LDL  N I+G IPS LG     L  L+L +N+++G  P+TL+S   LQ+LD+SNN +SG  P
Sbjct:   67 FHVTCNPENKVTRVDLGNAKLSGKLVPELGQLLNLQYLELYSNNITGEIPEELGDLVELVSLDLYANSISGPIPSSLGK-LGKLRFLRLNNNSLSGEIPMTLTSVQ-LQVLDISNNRLSGDIP 187          
BLAST of CX070293 vs. ExPASy Swiss-Prot
Match: Y2267_ARATH (Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.366e-14
Identity = 55/148 (37.16%), Postives = 74/148 (50.00%), Query Frame = -1
Query:  166 SNSDKLELLDLSYNNLTGSISGFSLNENSCNSLLHLDLSQNHIMDVIPSSLSNCTKLKILNLSFNLLAGEIPRTFGQLSSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHNNITGSFPVTLSSCSWLQLLDLSNNNISGPFPDSV 609
            SN   +  L L    L G I   SL       L  L L  N +   IPS  SN T L+ L L  N  +GE P +F QL++L RLD+S+N+ TG IP  + N    L  L L +N  +G+ P   S    L   ++SNNN++G  P S+
Sbjct:   63 SNQSSIHSLRLPGTGLVGQIPSGSLGR--LTELRVLSLRSNRLSGQIPSDFSNLTHLRSLYLQHNEFSGEFPTSFTQLNNLIRLDISSNNFTGSIPFSVNN-LTHLTGLFLGNNGFSGNLP---SISLGLVDFNVSNNNLNGSIPSSL 204          
The following BLAST results are available for this feature:
BLAST of CX070293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
Y5977_ARATH2.202e-1427.32Probable leucine-rich repeat receptor-like protein... [more]
Y5457_ARATH2.202e-1433.13Probable LRR receptor-like serine/threonine-protei... [more]
SRF3_ARATH2.875e-1429.13Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsi... [more]
SRF5_ARATH3.755e-1435.76Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
ROCO5_DICDI3.755e-1431.38Probable serine/threonine-protein kinase roco5 OS=... [more]
SHOC2_PONAB6.406e-1431.65Leucine-rich repeat protein SHOC-2 OS=Pongo abelii... [more]
SHOC2_HUMAN6.406e-1431.65Leucine-rich repeat protein SHOC-2 OS=Homo sapiens... [more]
SHOC2_BOVIN6.406e-1431.65Leucine-rich repeat protein SHOC-2 OS=Bos taurus G... [more]
SERK4_ARATH6.406e-1443.10Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
Y2267_ARATH8.366e-1437.16Probable inactive receptor kinase At2g26730 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15H09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15H09-P17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070293 ID=CX070293; Name=CX070293; organism=Citrus sinensis; type=EST; length=831bp
TGATGAAACTCCTGGACATATGTCTGGTGGGATGATTCCTGAAACCCTGT
TGGAACTGAAATCAACAATCCGTAGAGTCTTGCATGATGAAATGGAATCA
GGAAATGATCCAGAGATCATGTTGTTACTCAAAATCAAGCTCTCCAATGA
TCCAAGATTTTCCAGGACGGAGTCTGGAAAGGGACCTGAGATATTGTTAT
TAGACAAATCAAGTAATTGCAACCAGGAGCATGAAGACAAGGTGACTGGA
AAAGAGCCGGTTATGTTGTTGTGAGGGAGCTTAAGCTCAAGAAGAGAATC
ACATGCATTTCCCAACTCAGAAGGGATCCAACCAGTGATATGATTATTAG
AGAGATCCAATCTTTGTAAACTACTCAGCTGACCAAATGTTCTTGGGATC
TCCCCTGCGAGCAAATTGAATGATAAATTCAAAATTTTGAGTTTTGTGCA
ATTTGAAAGAGAGGAAGGGATAACATCCATTATATGATTTTGTGACAAGT
CTAGATGCAACAAGGAATTGCAAGAATTCTCATTCAAACTGAAACCGGAA
ATGGATCCTGTTAAGTTGTTGTAAGACAAGTCAAGAAGCTCAAGTTTATC
AGAATTTGATAAAAGGGTCTCTGGTAGAAACCCTGTCAAGTTGTTGTAAG
AAGCATTTAGGTAGACAAGATTTGGAAGTTTTGAGAAAAGATTGTCAGGG
ACCAGGCCTACAAGACCAGCTGAAGATAACTCAAGCTGTTTCAAACCAAA
TGGAAGTTGAAGCAAAGAAGTTGAATTGAGAGTAAATAAATTGGAAGACA
ATTTAAGAACAGACAACATATCTAGAGAGGC
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