CX070293

Overview
NameCX070293
Unique NameCX070293
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070293 vs. ExPASy Swiss-Prot
Match: LRC40_DANRE (Leucine-rich repeat-containing protein 40 OS=Danio rerio GN=lrrc40 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.366e-14
Identity = 76/234 (32.48%), Postives = 116/234 (49.57%), Query Frame = -1
Query:   43 LKQLELSSAGLVGLVPDNLFSKLPNLVYLNASYNNLTGFLPETLLSNSDKLELLDLSYNNLTGSISGFSLNENSCNSLLHLDLSQNHIMDVIPSSLSNCTKLKILNLSFNLLAGEIPRTFGQLSSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHNNITGSFPVTLSSCSWLQLLDLSNNNISGPFPDSVLENLGSLESLILSNNMISGSFPDSISSCKTLRIVDFSSNRV 744
            L +L LSS  L   +PD++   LP LV L+   N L+  LP+++  + ++L+ L LS+N LT                             +PS +   T L+ L+L  NL+  +IPR  GQL +L  LDLSNNH+   IP  L N   +L++L L  N +  S P  +S    L++LD S N +    P  VL  + SLE L L +N +   +   +  CKTL+ +   +N++
Sbjct:   82 LTKLLLSSNKLQS-IPDDV-KLLPALVVLDIHDNQLSS-LPDSI-GDLEQLQKLILSHNKLTE----------------------------LPSGVWRLTNLRCLHLQQNLIE-QIPRDLGQLVNLDELDLSNNHLID-IPESLAN-LQNLVKLDLSCNKLK-SLPPAISQMKNLRMLDCSRNQMESIPP--VLAQMESLEQLYLRHNKL--RYLPELPCCKTLKELHCGNNQI 275          
BLAST of CX070293 vs. ExPASy Swiss-Prot
Match: ALS_MOUSE (Insulin-like growth factor-binding protein complex acid labile subunit OS=Mus musculus GN=Igfals PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.366e-14
Identity = 67/204 (32.84%), Postives = 96/204 (47.06%), Query Frame = -1
Query:  115 LVGLVPDNLFSKLPNLVYLNASYNNLTGFLPETLLSNSDKLELLDLSYNNLTGSISGFSLNENSCNSLLHLDLSQNHIMDVIPSSLSNCTKLKILNLSFNLLAGEIPRTFGQLSSLQRLDLSNNHITGWI----PSELGNACDSLLELKLPHNNITGSFPVTLSSCSWLQLLDLSNNNISGPFPDSVLENLGSLESLILSNNMI 714
            L+G + + LF  L +L  LN  +N+L   LP+T+      L  L L+ N LT               L  LDLS+N +  V  +   +  +L+ L L  NL+    PR F  + +L+ LDLS+N + G +    P  LG     L  L+L HN IT   P T     +L+ L L +N I     +   E LG LE L L++N I
Sbjct:  157 LLGRLEEGLFRGLSHLWDLNLGWNSLV-VLPDTVFQGLGNLHELVLAGNKLTYLQPALLCG---LGELRELDLSRNALRSVKANVFIHLPRLQKLYLDRNLITAVAPRAFLGMKALRWLDLSHNRVAGLLEDTFPGLLG-----LHVLRLAHNAITSLRPRTFKDLHFLEELQLGHNRIR-QLGEKTFEGLGQLEVLTLNDNQI 350          
BLAST of CX070293 vs. ExPASy Swiss-Prot
Match: Y5659_ARATH (Probable inactive receptor kinase At5g16590 OS=Arabidopsis thaliana GN=At5g16590 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.093e-13
Identity = 50/153 (32.68%), Postives = 80/153 (52.29%), Query Frame = -1
Query:   13 IPSSLSNCTKLKILNLSFNLLAGEIPRTFGQLSSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHNNITGSFPVTLSSCSWLQLLDLSNNNISGPFPDSVLENLGSLESLILSNNMISGSFPDSISSCKTLRIVDFSSNRVSGIIPPDICP 471
            +P ++ N TKL+ L+  FN L G +P  F  L+ L+ L L  N  +G IPS L     +++ + L  NN  G  P  ++S + L  L L +N ++GP P+  ++    L+   +S+N ++GS PD +S    +    F  N + G  P D CP
Sbjct:   79 LPIAIGNLTKLETLSFRFNALNGPLPPDFANLTLLRYLYLQGNAFSGEIPSFLFTL-PNIIRINLAQNNFLGRIPDNVNSATRLATLYLQDNQLTGPIPEIKIK----LQQFNVSSNQLNGSIPDPLSG---MPKTAFLGNLLCG-KPLDACP 222          
BLAST of CX070293 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.093e-13
Identity = 55/161 (34.16%), Postives = 78/161 (48.45%), Query Frame = -1
Query:  160 SNSDKLELLDLSYNNLTGSISGFSLNE-NSC----------NSLLHLDLSQNHIMDVIPSSLSNCTKLKILNLSFNLLAGEIPRTFGQLSSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHNNITGSFPVTLSSCSWLQLLDLSNNNISGPFPDSVLE 609
            +  D L  L +S   L   +S ++ N+ N C          N +  L LS  +    + S +     LK L L  N + GEIP  FG L+SL  LDL +N +TG IPS +GN    L  L L  N + G+ P +L+    L  L L +N++SG  P S+ E
Sbjct:   29 AQGDALFALRISLRALPNQLSDWNQNQVNPCTWSQVICDDKNFVTSLTLSDMNFSGTLSSRVGILENLKTLTLKGNGITGEIPEDFGNLTSLTSLDLEDNQLTGRIPSTIGN-LKKLQFLTLSRNKLNGTIPESLTGLPNLLNLLLDSNSLSGQIPQSLFE 188          
BLAST of CX070293 vs. ExPASy Swiss-Prot
Match: SHOC2_MOUSE (Leucine-rich repeat protein SHOC-2 OS=Mus musculus GN=Shoc2 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.093e-13
Identity = 74/237 (31.22%), Postives = 113/237 (47.68%), Query Frame = -1
Query:   34 LPNLVYLNASYNNLTGFLPETLLSNSDKLELLDLSYNNLTGSISGFSLNENSCNSLLHLDLSQNHIMDVIPSSLSNCTKLKILNLSFNLLAGEIPRTFGQLSSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHNNIT----------------------GSFPVTLSSCSWLQLLDLSNNNISGPFPDSVLENLGSLESLILSNNMISGSFPDSISSCKTLRIVDFSSNRVSGI 678
            L NL+ L  S N+LT  LP++L  N  KL +LDL +N L    S         +SL  L L  N I  V    + N  KL +L++  N +  ++P   G+L +L  LD+++N +   +P E+GN C  +  L L HN++                        + P +L+ CS L+ L+L NNNIS   P+S+L +L  L SL L+ N          S   T+  ++   NR++ I
Sbjct:  145 LVNLMTLALSENSLTS-LPDSL-DNLKKLRMLDLRHNKLREIPSVVY----RLDSLTTLYLRFNRITTV-EKDIKNLPKLSMLSIRENKIK-QLPAEIGELCNLITLDVAHNQLEH-LPKEIGN-CTQITNLDLQHNDLLDLPDTIGNLSSLNRLGLRYNRLSAIPRSLAKCSALEELNLENNNIS-TLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKI 370          
BLAST of CX070293 vs. ExPASy Swiss-Prot
Match: Y3288_ARATH (Probable inactive receptor kinase At3g02880 OS=Arabidopsis thaliana GN=At3g02880 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.864e-13
Identity = 54/152 (35.53%), Postives = 76/152 (50.00%), Query Frame = -1
Query:    4 LSNCTKLKILNLSFNLLAGEIPRTFGQLSSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHNNITGSFPVTLSSCSWLQLLDLSNNNISGPFPDSVLENLGSLESLILSNNMISGSFPDSISSCKTLRIVDFSSNRVSGIIPPDICPGVS 459
            + N T+LK L+L FN L+G IP  F  L  L+ L L  N  +G IPS L     S++ + L  N  +G  P  ++S + L  L L  N +SGP P+  L     L+   +S+N ++GS P S+SS        F  N + G  P D C   S
Sbjct:   86 IGNLTQLKTLSLRFNSLSGPIPSDFSNLVLLRYLYLQGNAFSGEIPSLLFTL-PSIIRINLGENKFSGRIPDNVNSATRLVTLYLERNQLSGPIPEITL----PLQQFNVSSNQLNGSIPSSLSSWPR---TAFEGNTLCG-KPLDTCEAES 228          
BLAST of CX070293 vs. ExPASy Swiss-Prot
Match: Y1719_ARATH (Probable inactive receptor kinase At1g27190 OS=Arabidopsis thaliana GN=At1g27190 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.864e-13
Identity = 46/115 (40.00%), Postives = 63/115 (54.78%), Query Frame = -1
Query:   88 LNLSFNLLAGEIPRTFGQLSSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHNNITGSFPVTLSSCSWLQLLDLSNNNISGPFPDSVLENLGSLESLILSNNMISGSFPDSIS 432
            L L    LAGEIP +     SLQ LDLS N ++G IPS++ +    L+ L L  N + GS P  +  C +L  L LS+N +SG  P S L  L  L  L L+ N +SG+ P  ++
Sbjct:   77 LQLQSMQLAGEIPESLKLCRSLQSLDLSGNDLSGSIPSQICSWLPYLVTLDLSGNKLGGSIPTQIVECKFLNALILSDNKLSGSIP-SQLSRLDRLRRLSLAGNDLSGTIPSELA 190          

HSP 2 Score: 71.2478 bits (173), Expect = 7.830e-12
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = -1
Query:   19 LDLSNNHITGWIPSELGNACDSLLELKLPHNNITGSFPVTLSSCSWLQLL---DLSNNNISGPFPDSVLENLGSLESLILSNNMISGSFPDSISSCKTLRIVDFSSNRVSGIIPPDI 360
            L L +  + G IP  L   C SL  L L  N+++GS P  +  CSWL  L   DLS N + G  P  ++E    L +LILS+N +SGS P  +S    LR +  + N +SG IP ++
Sbjct:   77 LQLQSMQLAGEIPESL-KLCRSLQSLDLSGNDLSGSIPSQI--CSWLPYLVTLDLSGNKLGGSIPTQIVE-CKFLNALILSDNKLSGSIPSQLSRLDRLRRLSLAGNDLSGTIPSEL 189          
BLAST of CX070293 vs. ExPASy Swiss-Prot
Match: SHOC2_NEMVE (Leucine-rich repeat protein soc-2 homolog OS=Nematostella vectensis GN=v1g189306 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.864e-13
Identity = 75/230 (32.61%), Postives = 111/230 (48.26%), Query Frame = -1
Query:  121 LKQLELSSAGLVGLVPDNLFSKLPNLVYLNASYNNLTGFLPETLLSNSDKLELLDLSYNNLTGSISGFSLNENSCNSLLHLDLSQNHIMDVIPSSLSNCTKLKILNLSFNLLAGEIPRTFGQLSSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHNNI----------------------TGSFPVTLSSCSWLQLLDLSNNNISGPFPDSVLENLGSLESLILSNN 744
            L++L L    +  L P+     LPNL  L  S NNLT  LP+ L+  + KL++LDL +N +               +L  L L  N I  V+ S + N   L+ L+L  N +   +PR  GQL  L  LD+S+NHI   +P+E+GN C  +  L L HN+I                        S P +L++CS +   ++  NNI+   P+ +L +L +L SL LS N
Sbjct:  111 LRELYLYGNRIAVLPPE--VGLLPNLETLALSENNLTT-LPDNLVKLT-KLKVLDLRHNKIKEIPDVIY----KLTTLTTLYLRFNRI-SVVESGIGNLKLLERLSLRENKIK-ILPRVIGQLVHLVTLDISHNHIEN-LPAEIGN-CVHMTSLDLQHNDIPSLPDSIGRLTAMTRLGLRYNQLSSLPDSLANCSGIDEFNIEGNNIA-ELPEKLLSSLKNLTSLTLSRN 327          
BLAST of CX070293 vs. ExPASy Swiss-Prot
Match: SHOC2_DANRE (Leucine-rich repeat protein SHOC-2 OS=Danio rerio GN=shoc2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 78/259 (30.12%), Postives = 120/259 (46.33%), Query Frame = -1
Query:   34 LKQLELSSAGLVGLVPDNLFSKLPNLVYLNASYNNLTGFLPETLLSNSDKLELLDLSYNNLTGSISGFSLNENSCNSLLHLDLSQNHIMDVIPSSLSNCTKLKILNLSFNLLAGEIPRTFGQLSSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHNNIT----------------------GSFPVTLSSCSWLQLLDLSNNNISGPFPDSVLENLGSLESLILSNNMISGSFPDSISSCKTLRIVDFSSNRVSGI 744
            L +L L S  L  L P+     L  LV L  S N+LT  LP++L  N  KL +LDL +N L              +SL  L L  N I  V    + N +KL +L++  N +  ++P   G+L +L  LD+++N +   +P E+GN C  +  L L HN++                        + P +L+ C  L+ L+L NNNIS   P+ +L +L +L SL L+ N          S   T+  ++   NR++ I
Sbjct:  104 LTELYLYSNKLQSLPPE--VGCLSGLVTLALSENSLTS-LPDSL-DNLKKLRMLDLRHNKLRE----IPAVVYRVSSLTTLYLRFNRITTV-EKDIKNLSKLTMLSIRENKIK-QLPAEIGELCNLITLDVAHNQLEH-LPKEIGN-CTQITNLDLQHNDLLDLPETIGNLASINRLGLRYNRLSAIPRSLAKCRELEELNLENNNIS-VLPEGLLSSLVNLTSLTLARNCFQSYPVGGPSQFSTIYSLNMEHNRINKI 349          
BLAST of CX070293 vs. ExPASy Swiss-Prot
Match: CYAA_PODAN (Adenylate cyclase OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.179e-13
Identity = 68/217 (31.34%), Postives = 103/217 (47.47%), Query Frame = -1
Query:   34 DKLELLDLSYNNLTGSISGFSLNE------NSCNSLLHLDLSQNHIMDVIPSSLSNCTKLKILNLSFNLLAGEIPRTFGQLSSLQRLDLSNNHITGWIPSELGNACDSLLELKLPHN----------------------NITGSFPVTLSSCSWLQLLDLSNNNISGPFPDSVLENLGSLESLILSNNMISGSFPDSISSCKTLRIVDFSSNRVSGI 600
            D++E L    NN    +SG SL+          N ++ L+LS+N  + V    +S C  L+ +  + N  A  +P++FG  S L  LD SNN +     + L N    LL+L L +N                      N+  +FP  L+    L  LDLS N I    PD+V + + SLE L+++NN +SGS P S  + ++LR +D   N +S I
Sbjct:  746 DQMEFLRSQKNNHI-DLSGRSLSAIPVQLYPRANEIISLNLSRNLSLQVPRDFISVCPNLRDIKFNNNE-ARALPKSFGYASRLTMLDASNNRLESLESAALHNLT-GLLKLNLANNKLKQLPREFEAFAVLRTLNISSNLLNNFPPFLAKLENLVDLDLSFNTIQS-LPDNVGQ-MTSLERLVITNNELSGSLPPSFKNLRSLRELDIKYNAISNI 957          
The following BLAST results are available for this feature:
BLAST of CX070293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
LRC40_DANRE8.366e-1432.48Leucine-rich repeat-containing protein 40 OS=Danio... [more]
ALS_MOUSE8.366e-1432.84Insulin-like growth factor-binding protein complex... [more]
Y5659_ARATH1.093e-1332.68Probable inactive receptor kinase At5g16590 OS=Ara... [more]
Y5129_ARATH1.093e-1334.16Probable LRR receptor-like serine/threonine-protei... [more]
SHOC2_MOUSE1.093e-1331.22Leucine-rich repeat protein SHOC-2 OS=Mus musculus... [more]
Y3288_ARATH1.864e-1335.53Probable inactive receptor kinase At3g02880 OS=Ara... [more]
Y1719_ARATH1.864e-1340.00Probable inactive receptor kinase At1g27190 OS=Ara... [more]
SHOC2_NEMVE1.864e-1332.61Leucine-rich repeat protein soc-2 homolog OS=Nemat... [more]
SHOC2_DANRE3.179e-1330.12Leucine-rich repeat protein SHOC-2 OS=Danio rerio ... [more]
CYAA_PODAN3.179e-1331.34Adenylate cyclase OS=Podospora anserina PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15H09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15H09-P17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070293 ID=CX070293; Name=CX070293; organism=Citrus sinensis; type=EST; length=831bp
TGATGAAACTCCTGGACATATGTCTGGTGGGATGATTCCTGAAACCCTGT
TGGAACTGAAATCAACAATCCGTAGAGTCTTGCATGATGAAATGGAATCA
GGAAATGATCCAGAGATCATGTTGTTACTCAAAATCAAGCTCTCCAATGA
TCCAAGATTTTCCAGGACGGAGTCTGGAAAGGGACCTGAGATATTGTTAT
TAGACAAATCAAGTAATTGCAACCAGGAGCATGAAGACAAGGTGACTGGA
AAAGAGCCGGTTATGTTGTTGTGAGGGAGCTTAAGCTCAAGAAGAGAATC
ACATGCATTTCCCAACTCAGAAGGGATCCAACCAGTGATATGATTATTAG
AGAGATCCAATCTTTGTAAACTACTCAGCTGACCAAATGTTCTTGGGATC
TCCCCTGCGAGCAAATTGAATGATAAATTCAAAATTTTGAGTTTTGTGCA
ATTTGAAAGAGAGGAAGGGATAACATCCATTATATGATTTTGTGACAAGT
CTAGATGCAACAAGGAATTGCAAGAATTCTCATTCAAACTGAAACCGGAA
ATGGATCCTGTTAAGTTGTTGTAAGACAAGTCAAGAAGCTCAAGTTTATC
AGAATTTGATAAAAGGGTCTCTGGTAGAAACCCTGTCAAGTTGTTGTAAG
AAGCATTTAGGTAGACAAGATTTGGAAGTTTTGAGAAAAGATTGTCAGGG
ACCAGGCCTACAAGACCAGCTGAAGATAACTCAAGCTGTTTCAAACCAAA
TGGAAGTTGAAGCAAAGAAGTTGAATTGAGAGTAAATAAATTGGAAGACA
ATTTAAGAACAGACAACATATCTAGAGAGGC
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