DR404311

Overview
NameDR404311
Unique NameDR404311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6248 contig Csv1_Contig6248:3..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR404311 vs. ExPASy Swiss-Prot
Match: NUOE_AQUAE (NADH-quinone oxidoreductase subunit E OS=Aquifex aeolicus GN=nuoE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.846e-15
Identity = 43/139 (30.94%), Postives = 80/139 (57.55%), Query Frame = 3
Query:  186 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVAD 602
            ++F +  K K++E ++++P   +Q+ ++ L ++  Q + G++P  ++  +A ++E+    V  V  FY MF+R    KY + VC +  C + G+ ++  AL   LG+K  EVT DG F +  ++C+G C  AP+  V D
Sbjct:    6 FEFPEELKTKLQEHINYFPKK-RQAILLCLHEI--QNYYGYIPPESLKPLADMLELPLNHVEGVVAFYDMFDREDKAKYRIRVCVSIVCHLMGTNKLLKALENILGIKPGEVTPDGKFKIVPVQCLGACSEAPVFMVND 141          
BLAST of DR404311 vs. ExPASy Swiss-Prot
Match: NUOE_MYCTU (NADH-quinone oxidoreductase subunit E OS=Mycobacterium tuberculosis GN=nuoE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.013e-15
Identity = 46/126 (36.51%), Postives = 70/126 (55.56%), Query Frame = 3
Query:  219 KEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITV 596
            KEI+  YP   ++SA++PLL L Q +   +L  + +   A  + +    V  VA+FY+M+ R   G+Y + VC  T C V G   I D L +HLGV  +E T DG+ ++  +EC   C  AP++ V
Sbjct:   45 KEIIGRYPD--RRSALLPLLHLVQGEDS-YLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMV 167          
BLAST of DR404311 vs. ExPASy Swiss-Prot
Match: NUOE_MYCBO (NADH-quinone oxidoreductase subunit E OS=Mycobacterium bovis GN=nuoE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.013e-15
Identity = 46/126 (36.51%), Postives = 70/126 (55.56%), Query Frame = 3
Query:  219 KEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITV 596
            KEI+  YP   ++SA++PLL L Q +   +L  + +   A  + +    V  VA+FY+M+ R   G+Y + VC  T C V G   I D L +HLGV  +E T DG+ ++  +EC   C  AP++ V
Sbjct:   45 KEIIGRYPD--RRSALLPLLHLVQGEDS-YLTPAGLRFCADQLGLTGAEVSAVASFYTMYRRRPTGEYLVGVCTNTLCAVMGGDAIFDRLKEHLGVGHDETTSDGVVTLQHIECNAACDYAPVVMV 167          
BLAST of DR404311 vs. ExPASy Swiss-Prot
Match: NUOE_PSEAE (NADH-quinone oxidoreductase subunit E OS=Pseudomonas aeruginosa GN=nuoE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.546e-14
Identity = 41/140 (29.29%), Postives = 74/140 (52.86%), Query Frame = 3
Query:  195 SDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVADYSNG 614
            S+T +  ++  + HY     ++A I  L + Q+Q G W+P  A+  + +++ +    V  VATFYS   R  VG++ + VC +  C + G   +   + K LG+   + T DG F++  + C+G C  AP + + D ++G
Sbjct:   15 SETERSSIEHEMHHYED--PRAASIEALKIVQKQRG-WVPDGAIPAIGEVLGIPASDVEGVATFYSQIFRQPVGRHIIRVCDSMVCYIGGHESVVGEIQKQLGIGLGQTTADGRFTLLPVCCLGNCDKAPALMIDDDTHG 151          
BLAST of DR404311 vs. ExPASy Swiss-Prot
Match: NUOE_BUCBP (NADH-quinone oxidoreductase subunit E OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=nuoE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.546e-14
Identity = 46/150 (30.67%), Postives = 83/150 (55.33%), Query Frame = 3
Query:  177 DLPWKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITVAD--YSNGSE 620
            D+ +K +   K ++  I+ +Y +   +S++I +L   Q+ +G W+    + E+A I++++   + E+ATFYS   R  +G+  +  C +  C V G  +I  +L K+L V   E TKD  F++  + C+G C  +P I + D  YSN +E
Sbjct:   14 DIKFKLTIQEKIEIFNIIKNYRT--VRSSLIEILKFVQKSYG-WISNELITELACILKISKCDIEEIATFYSQIFRQPIGRNIIKYCDSVVCYVNGCEKIRCSLEKNLNVNVGETTKDFKFTLLPICCLGNCDKSPTIMINDDLYSNVTE 160          
BLAST of DR404311 vs. ExPASy Swiss-Prot
Match: NUOE_SHIFL (NADH-quinone oxidoreductase subunit E OS=Shigella flexneri GN=nuoE PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.120e-12
Identity = 41/137 (29.93%), Postives = 72/137 (52.55%), Query Frame = 3
Query:  186 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITV 596
            ++ S   +E ++  + HY     ++A I  L + Q+Q G W+P  A++ +A ++ +    V  VATFYS   R  VG++ +  C +  C + G + I+ AL K L +K  + T DG F++    C+G C   P + +
Sbjct:   12 FELSAAEREAIEHEMHHYED--PRAASIEALKIVQKQRG-WVPDGAIHAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMI 145          
BLAST of DR404311 vs. ExPASy Swiss-Prot
Match: NUOE_ECOLI (NADH-quinone oxidoreductase subunit E OS=Escherichia coli (strain K12) GN=nuoE PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.120e-12
Identity = 41/137 (29.93%), Postives = 72/137 (52.55%), Query Frame = 3
Query:  186 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITV 596
            ++ S   +E ++  + HY     ++A I  L + Q+Q G W+P  A++ +A ++ +    V  VATFYS   R  VG++ +  C +  C + G + I+ AL K L +K  + T DG F++    C+G C   P + +
Sbjct:   12 FELSAAEREAIEHEMHHYED--PRAASIEALKIVQKQRG-WVPDGAIHAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMI 145          
BLAST of DR404311 vs. ExPASy Swiss-Prot
Match: NUOE_ECOL6 (NADH-quinone oxidoreductase subunit E OS=Escherichia coli O6 GN=nuoE PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.120e-12
Identity = 41/137 (29.93%), Postives = 72/137 (52.55%), Query Frame = 3
Query:  186 WKFSDTNKEKVKEILSHYPSNYKQSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITV 596
            ++ S   +E ++  + HY     ++A I  L + Q+Q G W+P  A++ +A ++ +    V  VATFYS   R  VG++ +  C +  C + G + I+ AL K L +K  + T DG F++    C+G C   P + +
Sbjct:   12 FELSAAEREAIEHEMHHYED--PRAASIEALKIVQKQRG-WVPDGAIHAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGYQGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMI 145          
BLAST of DR404311 vs. ExPASy Swiss-Prot
Match: NUOE_SALTY (NADH-quinone oxidoreductase subunit E OS=Salmonella typhimurium GN=nuoE PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 40/128 (31.25%), Postives = 69/128 (53.91%), Query Frame = 3
Query:  219 KEILSHYPSNYK--QSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITV 596
            +E + H   +Y+  ++A I  L + Q+Q G W+P  A+  +A ++ +    V  VATFYS   R  VG++ +  C +  C + G + I+ AL K+L +K  + T DG F++    C+G C   P + +
Sbjct:   19 REAIEHEKHHYEDPRAASIEALKIVQKQRG-WVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHITGYQGIQAALEKNLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMI 145          
BLAST of DR404311 vs. ExPASy Swiss-Prot
Match: NUOE_SALTI (NADH-quinone oxidoreductase subunit E OS=Salmonella typhi GN=nuoE PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 40/128 (31.25%), Postives = 69/128 (53.91%), Query Frame = 3
Query:  219 KEILSHYPSNYK--QSAVIPLLDLAQQQHGGWLPVSAMNEVAKIIEVAPIRVYEVATFYSMFNRSKVGKYHLLVCGTTPCMVRGSREIEDALLKHLGVKRNEVTKDGLFSVGEMECMGCCVNAPMITV 596
            +E + H   +Y+  ++A I  L + Q+Q G W+P  A+  +A ++ +    V  VATFYS   R  VG++ +  C +  C + G + I+ AL K+L +K  + T DG F++    C+G C   P + +
Sbjct:   19 REAIEHEKHHYEDPRAASIEALKIVQKQRG-WVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHITGYQGIQAALEKNLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMI 145          
The following BLAST results are available for this feature:
BLAST of DR404311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
NUOE_AQUAE1.846e-1530.94NADH-quinone oxidoreductase subunit E OS=Aquifex a... [more]
NUOE_MYCTU7.013e-1536.51NADH-quinone oxidoreductase subunit E OS=Mycobacte... [more]
NUOE_MYCBO7.013e-1536.51NADH-quinone oxidoreductase subunit E OS=Mycobacte... [more]
NUOE_PSEAE4.546e-1429.29NADH-quinone oxidoreductase subunit E OS=Pseudomon... [more]
NUOE_BUCBP4.546e-1430.67NADH-quinone oxidoreductase subunit E OS=Buchnera ... [more]
NUOE_SHIFL1.120e-1229.93NADH-quinone oxidoreductase subunit E OS=Shigella ... [more]
NUOE_ECOLI1.120e-1229.93NADH-quinone oxidoreductase subunit E OS=Escherich... [more]
NUOE_ECOL61.120e-1229.93NADH-quinone oxidoreductase subunit E OS=Escherich... [more]
NUOE_SALTY5.557e-1231.25NADH-quinone oxidoreductase subunit E OS=Salmonell... [more]
NUOE_SALTI5.557e-1231.25NADH-quinone oxidoreductase subunit E OS=Salmonell... [more]

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Properties
Property NameValue
Genbank descriptionCSAG-PNP1245O21 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone CSAG-PNP1245O21 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR404311 ID=DR404311; Name=DR404311; organism=Citrus sinensis; type=EST; length=685bp
GGGGACCAAATCTGTGGCGTCACTCTTGTTGAGCTTAGAACTCGTCGAAA
ATGCTAGCTCGTCTCGCGGCCAAGCGTCTTCTCGAGATTCGTCAAGCAAT
CCGTCCATCTCTTCAGGCATCTCGATCTTTCTCCACTGCCCTGAACTATC
ATCTTGATTCTCCAGATAACAATCCGGACCTTCCGTGGAAGTTCTCTGAT
ACAAACAAAGAAAAGGTTAAGGAGATATTGTCTCACTATCCATCCAATTA
CAAGCAATCTGCTGTCATTCCACTGCTAGATCTTGCACAGCAGCAGCATG
GAGGGTGGCTTCCTGTTTCAGCAATGAATGAGGTAGCTAAAATTATAGAG
GTTGCTCCCATCCGTGTATATGAGGTTGCAACATTTTATTCAATGTTCAA
CAGATCAAAGGTAGGCAAATACCACCTACTGGTCTGTGGCACAACACCTT
GTATGGTACGTGGTTCACGAGAAATTGAAGATGCCTTACTGAAACACTTG
GGCGTGAAGCGCAATGAAGTAACTAAGGATGGCTTGTTCTCTGTTGGAGA
AATGGAATGCATGGGATGCTGTGTAAACGCTCCTATGATTACAGTGGCTG
ATTACTCCAATGGATCTGAAGGATATACTTACAATTATTATGAAGATGGT
CACTCCGAAACGAGTTATTGAGATAGTTGAANNGT
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