CX070280

Overview
NameCX070280
Unique NameCX070280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070280 vs. ExPASy Swiss-Prot
Match: GLGB_GLOIN (1,4-alpha-glucan-branching enzyme OS=Glomus intraradices GN=GLC3 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.706e-24
Identity = 63/161 (39.13%), Postives = 89/161 (55.28%), Query Frame = 1
Query:    4 YLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQV 480
            YLNF GNEFGHP+ ++FP   NN SF  A R W+++ + L  +  L  FD+ +  L+E    L      +   ++   ++ + RG L++IFNF PT S+ DY +G E AG+Y I LNTD   FGG   I E      +     DG +N I+V +P R A V
Sbjct:  520 YLNFEGNEFGHPEWLDFPRAGNNNSFHYARRQWNVVDDDLLRYKYLNEFDKAMQHLEEQYGWLSSPQAYISLKHNENKLVAFERGNLLWIFNFLPTQSFADYKIGTEWAGKYSIALNTDRKIFGGHDRIDE-SISYHSQPHEWDGRKNYIQVYIPCRVAPV 679          
BLAST of CX070280 vs. ExPASy Swiss-Prot
Match: GLGB_ORYSJ (1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SBE1 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.028e-23
Identity = 52/129 (40.31%), Postives = 77/129 (59.69%), Query Frame = 1
Query:    4 YLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLA--NRLHSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLI 384
            YLNFMGNEFGHP+ ++FP   NN+S+    R W L+   +  +  + +FDQ +  L+E    L      V  +N+   VI + RG LVF+FNFHP  +Y+ Y VG +  G+Y++ L++D   FGG G +
Sbjct:  587 YLNFMGNEFGHPEWIDFPREGNNWSYDKCRRQWSLVDTDHLRYKYMNAFDQAMNALEEEFSFLSSSKQIVSDMNEKDKVIVFERGDLVFVFNFHPNKTYKGYKVGCDLPGKYRVALDSDALVFGGHGRV 715          
BLAST of CX070280 vs. ExPASy Swiss-Prot
Match: GLGB_FELCA (1,4-alpha-glucan-branching enzyme OS=Felis catus GN=GBE1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.939e-22
Identity = 53/125 (42.40%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    4 YLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGG 372
            YLNFMGNEFGHP+ ++FP   NN S+  A R + L  + L  +  L +FD+++ KL+E    L      V   ++   +I + R  LVFIFNFHP+ SY DY VG    G+++I+L+TD +++GG
Sbjct:  532 YLNFMGNEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNKLEERCGWLSAPQAFVSEKHEGNKIIAFERAGLVFIFNFHPSKSYTDYRVGTTLPGKFRIVLDTDAAEYGG 656          
BLAST of CX070280 vs. ExPASy Swiss-Prot
Match: GLGB_MOUSE (1,4-alpha-glucan-branching enzyme OS=Mus musculus GN=Gbe1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.307e-22
Identity = 60/162 (37.04%), Postives = 92/162 (56.79%), Query Frame = 1
Query:    4 YLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGG-QGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQV 480
            YLNFMGNEFGHP+ ++FP   NN S+  A R ++L  + L  +  L +FD+++ +L+E    L      V   ++A   I + R  L+FIFNFHP+ SY DY VG    G+++I+L++D +++GG Q L     Y         +G    + V +PSR A +
Sbjct:  535 YLNFMGNEFGHPEWLDFPRKGNNESYHYARRQFNLTDDDLLRYKFLNNFDRDMNRLEERCGWLSAPQAYVSEKHEANKTITFERAGLLFIFNFHPSKSYTDYRVGTATPGKFKIVLDSDAAEYGGHQRLDHNTNYFAEAFEH--NGRPYSLLVYIPSRVALI 694          
BLAST of CX070280 vs. ExPASy Swiss-Prot
Match: GLGB_DICDI (1,4-alpha-glucan-branching enzyme OS=Dictyostelium discoideum GN=glgB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.307e-22
Identity = 60/163 (36.81%), Postives = 87/163 (53.37%), Query Frame = 1
Query:    4 YLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVYK 486
            YLNFMGNEFGHP+ V+FP   NN S   A R WDL  N L  +  L  FD  + K ++  + L      +   ++   +I + R  L+FIFNFHP+ S+ DY +G    G++  +L++D  +FGG   I +  Y   T  K     +  + + +PSRT  V K
Sbjct:  514 YLNFMGNEFGHPEWVDFPREGNNNSLHHARRRWDLYRNPLLRYKQLRDFDIAMNKAEQEFRWLSSDFAYISLKHEDDKIIVFERASLIFIFNFHPSKSFSDYRIGSGVPGKFINVLDSDRKEFGGHVRIGKDNY-HYTEDKPWHDRKYSLLIYIPSRTCLVLK 675          
BLAST of CX070280 vs. ExPASy Swiss-Prot
Match: GLGB_HUMAN (1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.800e-21
Identity = 58/162 (35.80%), Postives = 91/162 (56.17%), Query Frame = 1
Query:    4 YLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGG-QGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQV 480
            YLNFMGNEFGHP+ ++FP   NN S+  A R + L  + L  +  L +FD+++ +L+E    L      V   ++   +I + R  L+FIFNFHP+ SY DY VG    G+++I+L++D +++GG Q L     +         +G    + V +PSR A +
Sbjct:  535 YLNFMGNEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNRLEERYGWLAAPQAYVSEKHEGNKIIAFERAGLLFIFNFHPSKSYTDYRVGTALPGKFKIVLDSDAAEYGGHQRLDHSTDFFSEAFEH--NGRPYSLLVYIPSRVALI 694          
BLAST of CX070280 vs. ExPASy Swiss-Prot
Match: GLGB_HORSE (1,4-alpha-glucan-branching enzyme OS=Equus caballus GN=GBE1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.800e-21
Identity = 51/125 (40.80%), Postives = 78/125 (62.40%), Query Frame = 1
Query:    4 YLNFMGNEFGHPKRVEFPMPSNNFSFSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGG 372
            YLNFMGNEFGHP+ ++FP   NN S+  A R + L  + L  +  L +FD+++ KL+E    L      V   ++   VI + R  L+FIFNFHP+ SY +Y VG    G+++I+L++D +++GG
Sbjct:  532 YLNFMGNEFGHPEWLDFPRKGNNESYHYARRQFHLTDDDLLRYKFLNNFDRDMNKLEERCGWLSAPQAFVSEKHEGNKVIAFERAALLFIFNFHPSKSYTNYRVGTTLPGKFKIVLDSDAAEYGG 656          
BLAST of CX070280 vs. ExPASy Swiss-Prot
Match: GLGB_MAIZE (1,4-alpha-glucan-branching enzyme 2, chloroplastic/amyloplastic OS=Zea mays GN=SBE1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.043e-20
Identity = 60/173 (34.68%), Postives = 88/173 (50.87%), Query Frame = 1
Query:    4 YLNFMGNEFGHPKRVEFP-----------MPSNNFSFSLANRHWDLL-ANRL-HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVY 483
            YLNFMGNEFGHP+ ++FP           +P NN S+    R +DL  A+ L +  +  FDQ +  L++  + +      +   ++   VI + +G LVF+FNFH  +SY DY +G  + G Y+++L++D   FGG   I  H     T     D       V  PSRT  VY
Sbjct:  624 YLNFMGNEFGHPEWIDFPRGPQRLPSGKFIPGNNNSYDKCRRRFDLGDADYLRYHGMQEFDQAMQHLEQKYEFMTSDHQYISRKHEEDKVIVFEKGDLVFVFNFHCNNSYFDYRIGCRKPGVYKVVLDSDAGLFGGFSRI-HHAAEHFTADCSHDNRPYSFSVYTPSRTCVVY 795          
The following BLAST results are available for this feature:
BLAST of CX070280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
GLGB_GLOIN2.706e-2439.131,4-alpha-glucan-branching enzyme OS=Glomus intrar... [more]
GLGB_ORYSJ1.028e-2340.311,4-alpha-glucan-branching enzyme, chloroplastic/a... [more]
GLGB_FELCA1.939e-2242.401,4-alpha-glucan-branching enzyme OS=Felis catus G... [more]
GLGB_MOUSE3.307e-2237.041,4-alpha-glucan-branching enzyme OS=Mus musculus ... [more]
GLGB_DICDI3.307e-2236.811,4-alpha-glucan-branching enzyme OS=Dictyostelium... [more]
GLGB_HUMAN2.800e-2135.801,4-alpha-glucan-branching enzyme OS=Homo sapiens ... [more]
GLGB_HORSE2.800e-2140.801,4-alpha-glucan-branching enzyme OS=Equus caballu... [more]
GLGB_MAIZE4.043e-2034.681,4-alpha-glucan-branching enzyme 2, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15H02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15H02-P3-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070280 ID=CX070280; Name=CX070280; organism=Citrus sinensis; type=EST; length=776bp
GCTTATCTCAACTTCATGGGCAATGAATTTGGCCACCCAAAGAGGGTCGA
GTTCCCAATGCCAAGCAACAATTTCTCATTTTCTCTTGCCAATCGTCACT
GGGATTTGCTAGCCAACAGACTACATTCCAACTTATATTCCTTTGATCAG
GAACTGATGAAGTTGGATGAAAATGCAAAGGTGCTTCTGAGAGGTTCGCC
TAGCGTTCACCATGTGAATGATGCCAAGATGGTAATATGTTATATGAGAG
GTCCTCTTGTCTTCATATTCAACTTTCATCCAACAGATTCTTATGAAGAC
TACTCTGTGGGCGTGGAAGAAGCTGGAGAGTATCAAATAATACTAAATAC
TGATGAAAGTAAGTTTGGAGGTCAAGGACTTATTAAGGAGCACCAATATC
TTCAAAGGACCATCAGCAAAAGAGTTGATGGTTTGCGAAACTGCATAGAG
GTGCCTCTACCTAGTAGGACTGCCCAGGTTTATAAACTGAGCCGGATCTT
AAGAATCTAAGTCATTTTGCATTCCGAACAGATACTTGCAGAAATTCGAG
AACGAGAAGACTAATTACATCTTTGTTAAGTCACTCAAATGAGAAATTTT
CTCATTGATGGAGAGATGTTCTGTACTTCAGAACCCCAATCAGCTTGTGA
AGAGAAAGAAATGCATTTGTCCACCGATATTTTGCTACACTAGCTGGTAT
GGGTGTTCAGAATCCAATCTGATCCGCTCAATCTGTAGAAATTTGATTCG
TAAAAATTCGATCTGTAAATTGATGG
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