CX070279

Overview
NameCX070279
Unique NameCX070279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070279 vs. ExPASy Swiss-Prot
Match: GLGB_SOLTU (1,4-alpha-glucan-branching enzyme OS=Solanum tuberosum GN=SBE1 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.126e-13
Identity = 36/102 (35.29%), Postives = 58/102 (56.86%), Query Frame = -3
Query:  531 FSLANRHWDLLANR--LHSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQG 830
            +    R W+L  +    +  + +FD+ +  LDE    L  G   V  ++D   V+ + RG LVF+FNFHP ++YE Y VG +  G+Y++ L++D  +FGG G
Sbjct:  632 YDKCRRQWNLADSEHLRYKFMNAFDRAMNSLDEKFSFLASGKQIVSSMDDDNKVVVFERGDLVFVFNFHPKNTYEGYKVGCDLPGKYRVALDSDAWEFGGHG 733          
BLAST of CX070279 vs. ExPASy Swiss-Prot
Match: GLGB_ORYSJ (1,4-alpha-glucan-branching enzyme, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=SBE1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.016e-11
Identity = 35/104 (33.65%), Postives = 56/104 (53.85%), Query Frame = -3
Query:  525 FSLANRHWDLLA--NRLHSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLI 830
            +    R W L+   +  +  + +FDQ +  L+E    L      V  +N+   VI + RG LVF+FNFHP  +Y+ Y VG +  G+Y++ L++D   FGG G +
Sbjct:  612 YDKCRRQWSLVDTDHLRYKYMNAFDQAMNALEEEFSFLSSSKQIVSDMNEKDKVIVFERGDLVFVFNFHPNKTYKGYKVGCDLPGKYRVALDSDALVFGGHGRV 715          
BLAST of CX070279 vs. ExPASy Swiss-Prot
Match: GLGB_FELCA (1,4-alpha-glucan-branching enzyme OS=Felis catus GN=GBE1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.862e-11
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = -3
Query:  537 LYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGG 776
            L +FD+++ KL+E    L      V   ++   +I + R  LVFIFNFHP+ SY DY VG    G+++I+L+TD +++GG
Sbjct:  577 LNNFDRDMNKLEERCGWLSAPQAFVSEKHEGNKIIAFERAGLVFIFNFHPSKSYTDYRVGTTLPGKFRIVLDTDAAEYGG 656          
BLAST of CX070279 vs. ExPASy Swiss-Prot
Match: GLGB_DICDI (1,4-alpha-glucan-branching enzyme OS=Dictyostelium discoideum GN=glgB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.044e-11
Identity = 42/135 (31.11%), Postives = 67/135 (49.63%), Query Frame = -3
Query:  423 ANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGGQGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQVYK 821
            A R WDL  N L  +  L  FD  + K ++  + L      +   ++   +I + R  L+FIFNFHP+ S+ DY +G    G++  +L++D  +FGG   I +  Y   T  K     +  + + +PSRT  V K
Sbjct:  542 ARRRWDLYRNPLLRYKQLRDFDIAMNKAEQEFRWLSSDFAYISLKHEDDKIIVFERASLIFIFNFHPSKSFSDYRIGSGVPGKFINVLDSDRKEFGGHVRIGKDNY-HYTEDKPWHDRKYSLLIYIPSRTCLVLK 675          
BLAST of CX070279 vs. ExPASy Swiss-Prot
Match: GLGB_MOUSE (1,4-alpha-glucan-branching enzyme OS=Mus musculus GN=Gbe1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.588e-11
Identity = 43/137 (31.39%), Postives = 72/137 (52.55%), Query Frame = -3
Query:  429 FSLANRHWDLLANRL--HSNLYSFDQELMKLDENAKVLLRGSPSVHHVNDAKMVICYMRGPLVFIFNFHPTDSYEDYSVGVEEAGEYQIILNTDESKFGG-QGLIKEHQYLQRTISKRVDGLRNCIEVPLPSRTAQV 830
            +  A R ++L  + L  +  L +FD+++ +L+E    L      V   ++A   I + R  L+FIFNFHP+ SY DY VG    G+++I+L++D +++GG Q L     Y         +G    + V +PSR A +
Sbjct:  560 YHYARRQFNLTDDDLLRYKFLNNFDRDMNRLEERCGWLSAPQAYVSEKHEANKTITFERAGLLFIFNFHPSKSYTDYRVGTATPGKFKIVLDSDAAEYGGHQRLDHNTNYFAEAFEH--NGRPYSLLVYIPSRVALI 694          
The following BLAST results are available for this feature:
BLAST of CX070279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GLGB_SOLTU4.126e-1335.291,4-alpha-glucan-branching enzyme OS=Solanum tuber... [more]
GLGB_ORYSJ1.016e-1133.651,4-alpha-glucan-branching enzyme, chloroplastic/a... [more]
GLGB_FELCA3.862e-1140.001,4-alpha-glucan-branching enzyme OS=Felis catus G... [more]
GLGB_DICDI5.044e-1131.111,4-alpha-glucan-branching enzyme OS=Dictyostelium... [more]
GLGB_MOUSE6.588e-1131.391,4-alpha-glucan-branching enzyme OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15H02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15H02-P3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070279 ID=CX070279; Name=CX070279; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTTTTTTTTTTTTACTAAATCAATATTTTTTATTTTTTTACGAATT
CACGAATTTTTGAGAATTTACAGAAGTGAATCCATATCTAATCCACCAAC
TACGGATTTTCAAATTTTCAATCAAATCCAATCCATCAATTTACAGATCG
AATTTTTACGAATCAAATTTCTACAGATTGAGCGGATCAGATTGGATTCT
GAACACCCATACCAGCTAGTGTAGCAAAATATCGGTGGACAAATGCATTT
CTTTCTCTTCACAAGCTGATTGGGGTTCTGAAGTACAGAACATCTCTCCA
TCAATGAGAAAATTTCTCATTTGAGTGACTTAACAAAGATGTAATTAGTC
TTCTCGTTCTCGAATTTCTGCAAGTATCTGTTCGGAATGCAAAATGACTT
AGATTCTTAAGATCCGGCTCAGTTTATAAACCTGGGCAGTCCTACTAGGT
AGAGGCACCTCTATGCAGTTTCGCAAACCATCAACTCTTTTGCTGATGGT
CCTTTGAAGATATTGGTGCTCCTTAATAAGTCCTTGACCTCCAAACTTAC
TTTCATCAGTATTTAGTATTATTTGATACTCTCCAGCTTCTTCCACGCCC
ACAGAGTAGTCTTCATAAGAATCTGTTGGATGAAAGTTGAATATGAAGAC
AAGAGGACCTCTCATATAACATATTACCATCTTGGCATCATTCACATGGT
GAACGCTAGGCGAACCTCTCAGAAGCACCTTTGCATTTTCATCCAACTTC
ATCAGTTCCTGATCAAAGGAATATAAGTTGGAATGTAGTCTGTTGGCTAG
CAAATCCCAGTGACGATTGGCAAGAGAAAATG
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