CX070278

Overview
NameCX070278
Unique NameCX070278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DYN1_HUMAN (Dynamin-1 OS=Homo sapiens GN=DNM1 PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 5.659e-43
Identity = 96/182 (52.75%), Postives = 120/182 (65.93%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            ME+LI LVN++Q A +A+G + +          LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL      + EYAEFLH   K+FTDF  VR EI+ ETDR TG  K IS VPI+L +YSP+V+NLTL+DLPG+TKV V  QP  I   I +M+  ++ K NC+ILA+SP
Sbjct:    6 MEDLIPLVNRLQDAFSAIGQNADLD--------LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL---VNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSP 176          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DYN1_BOVIN (Dynamin-1 OS=Bos taurus GN=DNM1 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.659e-43
Identity = 96/182 (52.75%), Postives = 120/182 (65.93%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            ME+LI LVN++Q A +A+G + +          LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL      + EYAEFLH   K+FTDF  VR EI+ ETDR TG  K IS VPI+L +YSP+V+NLTL+DLPG+TKV V  QP  I   I +M+  ++ K NC+ILA+SP
Sbjct:    6 MEDLIPLVNRLQDAFSAIGQNADLD--------LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL---VNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSP 176          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DYN3_RAT (Dynamin-3 OS=Rattus norvegicus GN=Dnm3 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.261e-42
Identity = 98/183 (53.55%), Postives = 119/183 (65.03%), Query Frame = 3
Query:  213 KMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            +ME LI LVN++Q A +ALG         +    LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL        EYAEFLH   K+FTDF  VR EI+ ETDR TG  K ISSVPI+L +YSP+V+NLTLIDLPG+TKV V  QP  I   I +M+  +I + NC+ILA++P
Sbjct:    5 EMEELIPLVNRLQDAFSALGQ--------SCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL---VTSKAEYAEFLHCKGKKFTDFDEVRHEIEAETDRVTGMNKGISSVPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIRDMIMQFITRENCLILAVTP 176          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DYN3_MOUSE (Dynamin-3 OS=Mus musculus GN=Dnm3 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.647e-42
Identity = 97/183 (53.01%), Postives = 119/183 (65.03%), Query Frame = 3
Query:  213 KMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            +ME LI LVN++Q A +ALG         +    LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL        EYAEFLH   K+FTDF  VR EI+ ETDR TG  K ISS+PI+L +YSP+V+NLTLIDLPG+TKV V  QP  I   I +M+  +I + NC+ILA++P
Sbjct:    5 EMEELIPLVNRLQDAFSALGQ--------SCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL---VTSKAEYAEFLHCKGKKFTDFDEVRHEIEAETDRVTGMNKGISSIPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIRDMIMQFITRENCLILAVTP 176          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DYN3_HUMAN (Dynamin-3 OS=Homo sapiens GN=DNM3 PE=1 SV=4)

HSP 1 Score: 172.17 bits (435), Expect = 2.809e-42
Identity = 97/183 (53.01%), Postives = 118/183 (64.48%), Query Frame = 3
Query:  213 KMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            +ME LI LVN++Q A +ALG         +    LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL        EYAEFLH   K+FTDF  VR EI+ ETDR TG  K ISS+PI+L +YSP+V+NLTLIDLPG+TKV V  QP  I   I  M+  +I + NC+ILA++P
Sbjct:    5 EMEELIPLVNRLQDAFSALGQ--------SCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL---VTSKAEYAEFLHCKGKKFTDFDEVRLEIEAETDRVTGMNKGISSIPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIREMIMQFITRENCLILAVTP 176          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DYN1_CAEEL (Dynamin OS=Caenorhabditis elegans GN=dyn-1 PE=1 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 1.067e-41
Identity = 95/182 (52.20%), Postives = 120/182 (65.93%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            M+ LI ++N++Q A + LG         ++   LP IA            LE+ VGKDFLPRGSGIVTRRPL+LQL    +   EYAEFLH    RF DF AVRKEI+DETDR TG+ K IS  PI+L ++SPNV+NLTLIDLPGLTKV V  QP  I Q I +M+ ++I +  C+ILA++P
Sbjct:    8 MQALIPVINRVQDAFSQLGT--------SVSFELPQIAVVGGQSAGKSSVLENFVGKDFLPRGSGIVTRRPLILQLI---QDRNEYAEFLHKKGHRFVDFDAVRKEIEDETDRVTGQNKGISPHPINLRVFSPNVLNLTLIDLPGLTKVPVGDQPADIEQQIRDMILTFINRETCLILAVTP 178          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DYN2_RAT (Dynamin-2 OS=Rattus norvegicus GN=Dnm2 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.484e-40
Identity = 93/182 (51.10%), Postives = 117/182 (64.29%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            ME LI LVNK+Q A +++G              LP IA            LE+ VG+DFLPRGSGIVTRRPL+LQL        EYAEFLH   K+FTDF  VR+EI+ ETDR TG  K IS VPI+L +YSP+V+NLTLIDLPG+TKV V  QP  I   I++M+  +I + + +ILA++P
Sbjct:    6 MEELIPLVNKLQDAFSSIGQSCHLD--------LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLIF---SKTEYAEFLHCKSKKFTDFDEVRQEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTP 176          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DYN2_MOUSE (Dynamin-2 OS=Mus musculus GN=Dnm2 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 4.484e-40
Identity = 93/182 (51.10%), Postives = 117/182 (64.29%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            ME LI LVNK+Q A +++G              LP IA            LE+ VG+DFLPRGSGIVTRRPL+LQL        EYAEFLH   K+FTDF  VR+EI+ ETDR TG  K IS VPI+L +YSP+V+NLTLIDLPG+TKV V  QP  I   I++M+  +I + + +ILA++P
Sbjct:    6 MEELIPLVNKLQDAFSSIGQSCHLD--------LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLIF---SKTEYAEFLHCKSKKFTDFDEVRQEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTP 176          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DYN2_BOVIN (Dynamin-2 OS=Bos taurus GN=DNM2 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.484e-40
Identity = 93/182 (51.10%), Postives = 117/182 (64.29%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            ME LI LVNK+Q A +++G              LP IA            LE+ VG+DFLPRGSGIVTRRPL+LQL        EYAEFLH   ++FTDF  VR+EI+ ETDR TG  K IS VPI+L IYSP+V+NLTLIDLPG+TKV V  QP  I   I++M+  +I + + +ILA++P
Sbjct:    6 MEELIPLVNKLQDAFSSIGQSCHLD--------LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLIF---SKTEYAEFLHCKSRKFTDFEEVRQEIEAETDRVTGTNKGISPVPINLRIYSPHVLNLTLIDLPGITKVPVGDQPQDIEYQIKDMILQFISRESSLILAVTP 176          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DYNA_DICDI (Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.305e-39
Identity = 93/187 (49.73%), Postives = 119/187 (63.64%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKL---EEGSR--EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            M+ LI ++NK+Q     LG              LP I             LE+IVG+DFLPRGSGIVTRRPL+LQL  L   ++GS+  E+ EFLH P   F DF+ +R+EI  +TDR TG+ K IS+ PI+L IYSP+VVNLTL+DLPG+TKV V  QP  I Q I  MV +YI+K N II+A++P
Sbjct:    1 MDQLIPVINKLQDVFNTLGSDPL---------DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTP 178          
The following BLAST results are available for this feature:
BLAST of CX070278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
DYN1_HUMAN5.659e-4352.75Dynamin-1 OS=Homo sapiens GN=DNM1 PE=1 SV=2[more]
DYN1_BOVIN5.659e-4352.75Dynamin-1 OS=Bos taurus GN=DNM1 PE=2 SV=1[more]
DYN3_RAT1.261e-4253.55Dynamin-3 OS=Rattus norvegicus GN=Dnm3 PE=1 SV=2[more]
DYN3_MOUSE1.647e-4253.01Dynamin-3 OS=Mus musculus GN=Dnm3 PE=1 SV=1[more]
DYN3_HUMAN2.809e-4253.01Dynamin-3 OS=Homo sapiens GN=DNM3 PE=1 SV=4[more]
DYN1_CAEEL1.067e-4152.20Dynamin OS=Caenorhabditis elegans GN=dyn-1 PE=1 SV... [more]
DYN2_RAT4.484e-4051.10Dynamin-2 OS=Rattus norvegicus GN=Dnm2 PE=1 SV=1[more]
DYN2_MOUSE4.484e-4051.10Dynamin-2 OS=Mus musculus GN=Dnm2 PE=1 SV=2[more]
DYN2_BOVIN4.484e-4051.10Dynamin-2 OS=Bos taurus GN=DNM2 PE=2 SV=1[more]
DYNA_DICDI1.305e-3949.73Dynamin-A OS=Dictyostelium discoideum GN=dymA PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15H01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15H01-P1-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070278 ID=CX070278; Name=CX070278; organism=Citrus sinensis; type=EST; length=761bp
CCTCCCCACTTTCTTTTAAATTTCAAACTCTCTCTCTCTCTCTCTCTCTC
TCTCGTTTGTCCTACCGGCGAAGCAAAAACTAATCACACAGATCTCCTCT
GAACGTCGCCGTTTCCAGCATCAGTTGTCAGATCCAGCTGATCTGAATCT
GACAGCTGAGATCATCTACGTTGCCGCCGCCGTCTCCCGAGATATCTACT
TAGCTGCGAGAGAAAATGGAGAACTTGATTTCTTTGGTTAACAAAATACA
AAGAGCTTGTACGGCTCTTGGCGACCACGGTGAAGCCAGCGCATTGCCTA
CTCTTTGGGACTCTCTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCT
GGAAAGTCATCAGTGTTGGAGAGTATTGTTGGCAAGGACTTTTTACCGCG
TGGATCTGGTATCGTTACACGGCGTCCTCTGGTGTTGCAGCTTCATAAAC
TCGAAGAAGGCAGCAGAGAATATGCAGAGTTTCTTCACATTCCAAGGAAA
AGATTTACCGATTTTGCTGCTGTGAGGAAAGAGATTCAAGATGAGACTGA
TAGAGAGACTGGTCGTACCAAACAAATCTCGAGTGTACCAATTCATCTCA
GCATATATTCCCCTAATGTTGTCAACTTAACGCTGATTGATCTTCCTGGG
CTCACAAAAGTAGCAGTTGAGGGTCAACCAGACAGTATTGTGCAAGATAT
TGAGAATATGGTTCGCTCCTACATTGAGAAGCCCAACTGTATAATTCTTG
CAATTTCACCT
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