CX070278

Overview
NameCX070278
Unique NameCX070278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DYN2_HUMAN (Dynamin-2 OS=Homo sapiens GN=DNM2 PE=1 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.704e-39
Identity = 92/182 (50.55%), Postives = 117/182 (64.29%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            ME LI LVNK+Q A +++G              LP IA            LE+ VG+DFLPRGSGIVTRRPL+LQL        E+AEFLH   K+FTDF  VR+EI+ ETDR TG  K IS VPI+L +YSP+V+NLTLIDLPG+TKV V  QP  I   I++M+  +I + + +ILA++P
Sbjct:    6 MEELIPLVNKLQDAFSSIGQSCHLD--------LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLIF---SKTEHAEFLHCKSKKFTDFDEVRQEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIKDMILQFISRESSLILAVTP 176          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DNM1_YEAST (Dynamin-related protein DNM1 OS=Saccharomyces cerevisiae GN=DNM1 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.350e-36
Identity = 91/221 (41.18%), Postives = 126/221 (57.01%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKL--------------------------EEGSR-------------EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            +E+LI  VNK+Q       D    S + TL   LP +A            LE++VG+DFLPRG+GIVTRRPLVLQL+ +                          E G++             E+ EFLHIP KRF DF  +++EI++ET R  G+ K IS +PI+L ++SP+V+NLTL+DLPG+TKV +  QP  I + I+N++  YI  PNC+ILA+SP
Sbjct:    4 LEDLIPTVNKLQ-------DVMYDSGIDTL--DLPILAVVGSQSSGKSSILETLVGRDFLPRGTGIVTRRPLVLQLNNISPNSPLIEEDDNSVNPHDEVTKISGFEAGTKPLEYRGKERNHADEWGEFLHIPGKRFYDFDDIKREIENETARIAGKDKGISKIPINLKVFSPHVLNLTLVDLPGITKVPIGEQPPDIEKQIKNLILDYIATPNCLILAVSP 215          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: VPS1_YEAST (Vacuolar protein sorting-associated protein 1 OS=Saccharomyces cerevisiae GN=VPS1 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.928e-36
Identity = 92/221 (41.63%), Postives = 119/221 (53.85%), Query Frame = 3
Query:  219 ENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQL-----------------------------------------HKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAIS 758
            E+LIS +NK+Q A   LG   ++         LP I             LE+IVG+DFLPRG+GIVTRRPLVLQL                                          + E+   E+ EFLH+P K+F +F  +RKEI  ETD+ TG    ISSVPI+L IYSP+V+ LTL+DLPGLTKV V  QP  I + I++M+  YI KPN IIL+++
Sbjct:    3 EHLISTINKLQDALAPLGGGSQSPI------DLPQITVVGSQSSGKSSVLENIVGRDFLPRGTGIVTRRPLVLQLINRRPKKSEHAKVNQTANELIDLNINDDDKKKDESGKHQNEGQSEDNKEEWGEFLHLPGKKFYNFDEIRKEIVKETDKVTGANSGISSVPINLRIYSPHVLTLTLVDLPGLTKVPVGDQPPDIERQIKDMLLKYISKPNAIILSVN 217          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: VPS1_SCHPO (Vacuolar protein sorting-associated protein 1 OS=Schizosaccharomyces pombe GN=vps1 PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.493e-35
Identity = 90/197 (45.69%), Postives = 118/197 (59.90%), Query Frame = 3
Query:  222 NLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQL------------------HKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAIS 758
            +LI +VN++Q A + +G       +  L D LP I             LE+IVG+DFLPRG+GIVTRRPLVLQL                   K +  S E+ EFLH+P ++F +F  +R+EI  ET+ +TG+   ISSVPI+L IYSP+V+ LTL+DLPGLTKV V  QP  I + I  MV  YI K N IILA++
Sbjct:    4 SLIKVVNQLQEAFSTVG-------VQNLID-LPQITVVRSQSSGKSSVLENIVGRDFLPRGTGIVTRRPLVLQLINRPSASGKNEETTTDSDGKDQNNSSEWGEFLHLPGQKFFEFEKIREEIVRETEEKTGKNVGISSVPIYLRIYSPHVLTLTLVDLPGLTKVPVGDQPRDIEKQIREMVLKYISKNNAIILAVN 192          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DNM1L_DANRE (Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.493e-35
Identity = 86/193 (44.56%), Postives = 114/193 (59.07%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSR------------EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAIS 758
            ME LI ++NK+Q     +G    A  +      LP IA            LES+VG+D LPRG+GIVTRRPL+LQL  ++   R            E+ +FLH   K +TDF  +R+EI++ET+R +G  K IS  PIHL I+SP+VVNLTL+DLPG+TKV V  QP  I   I  ++  YI  PN IILA++
Sbjct:    1 MEALIPVINKLQDVFNTVG----ADII-----QLPQIAVVGTQSSGKSSVLESLVGRDLLPRGTGIVTRRPLILQLVHVDPEDRRKTSEENGVDGEEWGKFLHTKNKIYTDFDEIRQEIENETERVSGNNKGISDEPIHLKIFSPHVVNLTLVDLPGITKVPVGDQPKDIELQIRELILKYISNPNSIILAVT 184          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DNM1L_HUMAN (Dynamin-1-like protein OS=Homo sapiens GN=DNM1L PE=1 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 4.343e-35
Identity = 86/194 (44.33%), Postives = 114/194 (58.76%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQL-HKLEEGSR------------EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAIS 758
            ME LI ++NK+Q     +G    A  +      LP I             LES+VG+D LPRG+GIVTRRPL+LQL H  +E  R            E+ +FLH   K +TDF  +R+EI++ET+R +G  K +S  PIHL I+SPNVVNLTL+DLPG+TKV V  QP  I   I  ++  +I  PN IILA++
Sbjct:    1 MEALIPVINKLQDVFNTVG----ADII-----QLPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGIVTRRPLILQLVHVSQEDKRKTTGEENGVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKIFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVT 185          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DRP3B_ARATH (Dynamin-related protein 3B OS=Arabidopsis thaliana GN=DRP3B PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.155e-34
Identity = 85/203 (41.87%), Postives = 121/203 (59.61%), Query Frame = 3
Query:  171 LPPPSPEIST*LREKMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGS-----REYAEFLHI-PRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            LPP S    T L     ++I +VNK+Q     LG     +        LP +A            LE++VG+DFLPRG+ I TRRPL LQL + +  S      E+ EFLH  P +R  DF+ +R+EI+ ET+R +G  K +S +PI L I+SPNV++++L+DLPG+TKV V  QP  I   I  M+ +YI++P+C+ILA+SP
Sbjct:    6 LPPSSASAVTPLGS---SVIPIVNKLQDIFAQLGSQSTIA--------LPQVAVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLRLQLVQTKPSSDGGSDEEWGEFLHHDPVRRIYDFSEIRREIEAETNRVSGENKGVSDIPIGLKIFSPNVLDISLVDLPGITKVPVGDQPSDIEARIRTMILTYIKEPSCLILAVSP 197          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: YB68_SCHPO (Dynamin-like protein C12C2.08 OS=Schizosaccharomyces pombe GN=SPBC12C2.08 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.271e-34
Identity = 93/218 (42.66%), Postives = 116/218 (53.21%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKL-------------------------EEGSRE-----------YAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            ME LI LVN++Q            + + + +  LP+I             LE+IVGKDFLPRG+GIVTRRPL+LQL  L                         E GS E           YAEFLHIP  +FTD   VR EI++ET R  G  K I+ +PI+L IYS  V+NLTLIDLPGLTK+ V  QP  I     +++  YI +PN IILA+SP
Sbjct:    1 MEQLIPLVNQLQDLVY--------NTIGSDFLDLPSIVVVGSQSCGKSSVLENIVGKDFLPRGTGIVTRRPLILQLINLKRKTKNNHDEESTSDNNSEETSAAGETGSLEGIEEDSDEIEDYAEFLHIPDTKFTDMNKVRAEIENETLRVAGANKGINKLPINLKIYSTRVLNLTLIDLPGLTKIPVGDQPTDIEAQTRSLIMEYISRPNSIILAVSP 210          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DRP3A_ARATH (Dynamin-related protein 3A OS=Arabidopsis thaliana GN=DRP3A PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 6.271e-34
Identity = 82/200 (41.00%), Postives = 115/200 (57.50%), Query Frame = 3
Query:  180 PSPEIST*LREKM-ENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSR-----EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            PSP  ST     +  ++I +VNK+Q     LG     +        LP +             LE++VG+DFLPRG+ I TRRPLVLQL + +  +      E+ EF H+P  RF DF+ +R+EI+ ET+R  G  K ++   I L I SPNV+N+TL+DLPG+TKV V  QP  I   I  M+ SYI++  C+ILA++P
Sbjct:   21 PSPSSSTTNAAPLGSSVIPIVNKLQDIFAQLGSQSTIA--------LPQVVVVGSQSSGKSSVLEALVGRDFLPRGNDICTRRPLVLQLLQTKSRANGGSDDEWGEFRHLPETRFYDFSEIRREIEAETNRLVGENKGVADTQIRLKISSPNVLNITLVDLPGITKVPVGDQPSDIEARIRTMILSYIKQDTCLILAVTP 212          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DNM1L_MOUSE (Dynamin-1-like protein OS=Mus musculus GN=Dnm1l PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 8.191e-34
Identity = 84/200 (42.00%), Postives = 113/200 (56.50%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQL-HKLEEGSR------------------EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAIS 758
            ME LI ++NK+Q     +G    A  +      LP I             LES+VG+D LPRG+G+VTRRPL+LQL H   E  R                  E+ +FLH   K +TDF  +R+EI++ET+R +G  K +S  PIHL ++SPNVVNLTL+DLPG+TKV V  QP  I   I  ++  +I  PN IILA++
Sbjct:    1 MEALIPVINKLQDVFNTVG----ADII-----QLPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGVVTRRPLILQLVHVSPEDKRKTTGEENGKFQSWRVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKVFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVT 191          
The following BLAST results are available for this feature:
BLAST of CX070278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
DYN2_HUMAN1.704e-3950.55Dynamin-2 OS=Homo sapiens GN=DNM2 PE=1 SV=2[more]
DNM1_YEAST1.350e-3641.18Dynamin-related protein DNM1 OS=Saccharomyces cere... [more]
VPS1_YEAST3.928e-3641.63Vacuolar protein sorting-associated protein 1 OS=S... [more]
VPS1_SCHPO1.493e-3545.69Vacuolar protein sorting-associated protein 1 OS=S... [more]
DNM1L_DANRE1.493e-3544.56Dynamin-1-like protein OS=Danio rerio GN=dnm1l PE=... [more]
DNM1L_HUMAN4.343e-3544.33Dynamin-1-like protein OS=Homo sapiens GN=DNM1L PE... [more]
DRP3B_ARATH2.155e-3441.87Dynamin-related protein 3B OS=Arabidopsis thaliana... [more]
YB68_SCHPO6.271e-3442.66Dynamin-like protein C12C2.08 OS=Schizosaccharomyc... [more]
DRP3A_ARATH6.271e-3441.00Dynamin-related protein 3A OS=Arabidopsis thaliana... [more]
DNM1L_MOUSE8.191e-3442.00Dynamin-1-like protein OS=Mus musculus GN=Dnm1l PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_15H01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15H01-P1-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070278 ID=CX070278; Name=CX070278; organism=Citrus sinensis; type=EST; length=761bp
CCTCCCCACTTTCTTTTAAATTTCAAACTCTCTCTCTCTCTCTCTCTCTC
TCTCGTTTGTCCTACCGGCGAAGCAAAAACTAATCACACAGATCTCCTCT
GAACGTCGCCGTTTCCAGCATCAGTTGTCAGATCCAGCTGATCTGAATCT
GACAGCTGAGATCATCTACGTTGCCGCCGCCGTCTCCCGAGATATCTACT
TAGCTGCGAGAGAAAATGGAGAACTTGATTTCTTTGGTTAACAAAATACA
AAGAGCTTGTACGGCTCTTGGCGACCACGGTGAAGCCAGCGCATTGCCTA
CTCTTTGGGACTCTCTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCT
GGAAAGTCATCAGTGTTGGAGAGTATTGTTGGCAAGGACTTTTTACCGCG
TGGATCTGGTATCGTTACACGGCGTCCTCTGGTGTTGCAGCTTCATAAAC
TCGAAGAAGGCAGCAGAGAATATGCAGAGTTTCTTCACATTCCAAGGAAA
AGATTTACCGATTTTGCTGCTGTGAGGAAAGAGATTCAAGATGAGACTGA
TAGAGAGACTGGTCGTACCAAACAAATCTCGAGTGTACCAATTCATCTCA
GCATATATTCCCCTAATGTTGTCAACTTAACGCTGATTGATCTTCCTGGG
CTCACAAAAGTAGCAGTTGAGGGTCAACCAGACAGTATTGTGCAAGATAT
TGAGAATATGGTTCGCTCCTACATTGAGAAGCCCAACTGTATAATTCTTG
CAATTTCACCT
back to top