CX070278

Overview
NameCX070278
Unique NameCX070278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DNM1L_BOVIN (Dynamin-1-like protein OS=Bos taurus GN=DNM1L PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.383e-33
Identity = 86/207 (41.55%), Postives = 113/207 (54.59%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQL-HKLEEGSR-------------------------EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAIS 758
            ME LI ++NK+Q     +G    A  +      LP I             LES+VG+D LPRG+GIVTRRPL+LQL H   E  R                         E+ +FLH   K +TDF  +R+EI++ET+R +G  K +S  PIHL I+SPNVVNLTL+DLPG+TKV V  QP  I   I  ++  +I  PN IILA++
Sbjct:    1 MEALIPVINKLQDVFNTVG----ADII-----QLPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGIVTRRPLILQLVHVAPEDKRKTTGEENDPATWKNSRHLSKGVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKIFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVT 198          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DNM1L_RAT (Dynamin-1-like protein OS=Rattus norvegicus GN=Dnm1l PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.309e-33
Identity = 84/207 (40.58%), Postives = 113/207 (54.59%), Query Frame = 3
Query:  216 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQL-HKLEEGSR-------------------------EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAIS 758
            ME LI ++NK+Q     +G    A  +      LP I             LES+VG+D LPRG+G+VTRRPL+LQL H   E  R                         E+ +FLH   K +TDF  +R+EI++ET+R +G  K +S  PIHL ++SPNVVNLTL+DLPG+TKV V  QP  I   I  ++  +I  PN IILA++
Sbjct:    1 MEALIPVINKLQDVFNTVG----ADII-----QLPQIVVVGTQSSGKSSVLESLVGRDLLPRGTGVVTRRPLILQLVHVSPEDKRKTTGEENDPATWKNSRHLSKGVEAEEWGKFLHTKNKLYTDFDEIRQEIENETERISGNNKGVSPEPIHLKVFSPNVVNLTLVDLPGMTKVPVGDQPKDIELQIRELILRFISNPNSIILAVT 198          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: DYNB_DICDI (Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.017e-32
Identity = 85/206 (41.26%), Postives = 113/206 (54.85%), Query Frame = 3
Query:  222 NLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSR--------------------------EYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            +L+ ++NK+Q     +G             +LP I             LE++VG+DFLPRGSG+VTRRPLVLQL++    SR                          E+ EF H    RF +F  +++EI+ ET+R  G  K ISS PI L IYSP VV LTL+DLPGLT+VA+E QP  I + I++M+  YI  PN IILAI+P
Sbjct:  136 SLLPIINKLQENAALIGSE----------ITLPQIIVVGSQSSGKSSVLENLVGRDFLPRGSGLVTRRPLVLQLYQTTTTSRNNVNENEDEDEDDNYYDNDNDDNSLEEWGEFGHTGTNRF-NFQEIKEEIERETERIAGPNKDISSEPIVLKIYSPKVVPLTLVDLPGLTRVAIEDQPPDIEEKIKSMIIDYISNPNSIILAITP 330          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX_PERFL (Interferon-induced GTP-binding protein Mx (Fragment) OS=Perca fluviatilis GN=mx PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.731e-20
Identity = 61/151 (40.40%), Postives = 87/151 (57.62%), Query Frame = 3
Query:  312 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIP-RKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +EG   Y +  +    K   D A V K+I+D  D   G    IS   I L I SP+V +LTLIDLPG+ +VAV+GQP++I   I+ +++ +I++   I L + P
Sbjct:   34 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRRQEGEEWYGKISYQDCEKEIEDPADVEKKIRDAQDEMAGVGVGISDDLISLEIASPDVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQKFIKRQETISLVVVP 183          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX_DICLA (Interferon-induced GTP-binding protein Mx OS=Dicentrarchus labrax GN=mx PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.500e-19
Identity = 60/151 (39.74%), Postives = 87/151 (57.62%), Query Frame = 3
Query:  312 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIP-RKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ +  EG   Y +  +I   +   D A V K+I++  ++  G    IS   I L I SP+V +LTLIDLPG+ +VAV+GQP++I   I+ +++ +I K   I L + P
Sbjct:   32 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKNEGEEWYGKITYIGFEENIKDPADVEKKIREAQNKIAGPGSGISEDLISLEIASPDVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQKFITKQETISLVVVP 181          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX1_SHEEP (Interferon-induced GTP-binding protein Mx1 OS=Ovis aries GN=MX1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.341e-19
Identity = 73/186 (39.25%), Postives = 96/186 (51.61%), Query Frame = 3
Query:  210 EKMENLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK-RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            E   NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KLE+      +   + R+   +D + V KEI +      G    IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I   I++++R YI +   I L + P
Sbjct:   31 ESKGNLYSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLRLKKLEKEGEWKGKVSFLDREIEISDASQVEKEISEAQIAIAGEGMGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPHDIEYQIKSLIRKYILRQETINLVVVP 213          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX1_RAT (Interferon-induced GTP-binding protein Mx1 OS=Rattus norvegicus GN=Mx1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.699e-19
Identity = 70/186 (37.63%), Postives = 100/186 (53.76%), Query Frame = 3
Query:  210 EKMENLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK-RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            E ++NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L +L++G +   + ++   +   +  + V +EI    +   G   +ISS  I L + SP+V +LTLIDLPG+T+VAV  QP  I   I+ ++  YI+K   I L + P
Sbjct:   27 ESVDNLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKQLKQGEKWSGKVIYKDTEIEISHPSLVEREINKAQNLIAGEGLKISSDLISLEVSSPHVPDLTLIDLPGITRVAVGDQPADIEHKIKRLITEYIQKQETINLVVVP 209          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX_SINCH (Interferon-induced GTP-binding protein Mx OS=Siniperca chuatsi GN=mx PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.720e-19
Identity = 60/151 (39.74%), Postives = 86/151 (56.95%), Query Frame = 3
Query:  312 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKR-FTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +EG   Y +  +   +    D A V K+I++  D   G    IS   I L I SP V +LTLIDLPG+ +VAV+GQP++I   I+ +++++I K   I L + P
Sbjct:   32 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKKEGEEWYGKISYQNHEEEIEDPADVEKKIREAQDEMAGVGVGISDDLISLEIGSPGVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIQTFITKQETISLVVVP 181          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX2_MOUSE (Interferon-induced GTP-binding protein Mx2 OS=Mus musculus GN=Mx2 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 9.720e-19
Identity = 72/187 (38.50%), Postives = 98/187 (52.41%), Query Frame = 3
Query:  207 REKMENLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK-RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            +E + NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL EG     +  +   +   +D + V + I    +   G    IS   I L + SPNV +LTLIDLPG+T+VAV  QP  I + I+ ++++YI+K   I L + P
Sbjct:   28 QESVNNLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLRKLNEGEEWRGKVSYDDIEVELSDPSEVEEAINKGQNFIAGVGLGISDKLISLDVSSPNVPDLTLIDLPGITRVAVGNQPADIGRQIKRLIKTYIQKQETINLVVVP 211          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX_ONCMY (Interferon-induced GTP-binding protein Mx OS=Oncorhynchus mykiss GN=mx PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.658e-18
Identity = 59/151 (39.07%), Postives = 87/151 (57.62%), Query Frame = 3
Query:  312 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKR-FTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +EG   + +  +   +    D + V K+I++  D   G    IS   I L I SP+V +LTLIDLPG+ +VAV+GQP++I + I+ ++R +I K   I L + P
Sbjct:   33 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKKEGEEWHGKISYQDHEEEIEDPSDVEKKIREAQDEMAGVGVGISDDLISLEIGSPDVPDLTLIDLPGIARVAVKGQPENIGEQIKRLIRKFIMKQETISLVVVP 182          
The following BLAST results are available for this feature:
BLAST of CX070278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
DNM1L_BOVIN2.383e-3341.55Dynamin-1-like protein OS=Bos taurus GN=DNM1L PE=2... [more]
DNM1L_RAT5.309e-3340.58Dynamin-1-like protein OS=Rattus norvegicus GN=Dnm... [more]
DYNB_DICDI2.017e-3241.26Dynamin-B OS=Dictyostelium discoideum GN=dymB PE=3... [more]
MX_PERFL6.731e-2040.40Interferon-induced GTP-binding protein Mx (Fragmen... [more]
MX_DICLA1.500e-1939.74Interferon-induced GTP-binding protein Mx OS=Dicen... [more]
MX1_SHEEP3.341e-1939.25Interferon-induced GTP-binding protein Mx1 OS=Ovis... [more]
MX1_RAT5.699e-1937.63Interferon-induced GTP-binding protein Mx1 OS=Ratt... [more]
MX_SINCH9.720e-1939.74Interferon-induced GTP-binding protein Mx OS=Sinip... [more]
MX2_MOUSE9.720e-1938.50Interferon-induced GTP-binding protein Mx2 OS=Mus ... [more]
MX_ONCMY1.658e-1839.07Interferon-induced GTP-binding protein Mx OS=Oncor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15H01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15H01-P1-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070278 ID=CX070278; Name=CX070278; organism=Citrus sinensis; type=EST; length=761bp
CCTCCCCACTTTCTTTTAAATTTCAAACTCTCTCTCTCTCTCTCTCTCTC
TCTCGTTTGTCCTACCGGCGAAGCAAAAACTAATCACACAGATCTCCTCT
GAACGTCGCCGTTTCCAGCATCAGTTGTCAGATCCAGCTGATCTGAATCT
GACAGCTGAGATCATCTACGTTGCCGCCGCCGTCTCCCGAGATATCTACT
TAGCTGCGAGAGAAAATGGAGAACTTGATTTCTTTGGTTAACAAAATACA
AAGAGCTTGTACGGCTCTTGGCGACCACGGTGAAGCCAGCGCATTGCCTA
CTCTTTGGGACTCTCTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCT
GGAAAGTCATCAGTGTTGGAGAGTATTGTTGGCAAGGACTTTTTACCGCG
TGGATCTGGTATCGTTACACGGCGTCCTCTGGTGTTGCAGCTTCATAAAC
TCGAAGAAGGCAGCAGAGAATATGCAGAGTTTCTTCACATTCCAAGGAAA
AGATTTACCGATTTTGCTGCTGTGAGGAAAGAGATTCAAGATGAGACTGA
TAGAGAGACTGGTCGTACCAAACAAATCTCGAGTGTACCAATTCATCTCA
GCATATATTCCCCTAATGTTGTCAACTTAACGCTGATTGATCTTCCTGGG
CTCACAAAAGTAGCAGTTGAGGGTCAACCAGACAGTATTGTGCAAGATAT
TGAGAATATGGTTCGCTCCTACATTGAGAAGCCCAACTGTATAATTCTTG
CAATTTCACCT
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