CX070278

Overview
NameCX070278
Unique NameCX070278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MXB_DANRE (Interferon-induced GTP-binding protein MxB OS=Danio rerio GN=mxb PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.658e-18
Identity = 60/151 (39.74%), Postives = 85/151 (56.29%), Query Frame = 3
Query:  312 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKR-FTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +E  + +    +   +  F D A V K+I++  D   G    IS   I L I S NV +LTLIDLPG+ +VAV+GQP++I   I+ ++R +I K   I L + P
Sbjct:   36 ALPAIAVIGDQSSGKSSVLEALSGVP-LPRGSGIVTRCPLELKMIRSKEDEKWHGRISYQNHEEDFDDPAEVEKKIREAQDEMAGAGVGISEELISLQITSANVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIRMFITKQETINLVVVP 185          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX1_BOVIN (Interferon-induced GTP-binding protein Mx1 OS=Bos taurus GN=MX1 PE=2 SV=4)

HSP 1 Score: 91.6633 bits (226), Expect = 4.824e-18
Identity = 76/198 (38.38%), Postives = 99/198 (50.00%), Query Frame = 3
Query:  183 SPEIST*LREKME---NLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK-RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            SPE S    E ME   NL S   +  R C  L D     +L    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL        +   + ++    D + V KEI +      G    IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I   I++++R YI +   I L + P
Sbjct:   13 SPESSLNGSEDMESKSNLYSQYEEKVRPCIDLID--SLRSLGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLRLKKLGNEDEWKGKVSFLDKEIEIPDASQVEKEISEAQIAIAGEGTGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPPDIEYQIKSLIRKYILRQETINLVVVP 207          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX_EPICO (Interferon-induced GTP-binding protein Mx OS=Epinephelus coioides GN=mx PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.300e-18
Identity = 58/151 (38.41%), Postives = 85/151 (56.29%), Query Frame = 3
Query:  312 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIP-RKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +EG   Y +  +    K   D + V  +I++  D   G    IS   I L I SP+V +LTLIDLPG+ +VAV+GQP+ I + I+ +++ +I +   I L + P
Sbjct:   32 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKKEGEEWYGKISYRGCEKELEDPSDVENKIREAQDEMAGVGVGISDDLISLEIASPDVPDLTLIDLPGIARVAVKGQPEDIGKQIKGLIQRFITRQETISLVVVP 181          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX3_RAT (Interferon-induced GTP-binding protein Mx3 OS=Rattus norvegicus GN=Mx3 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.229e-18
Identity = 69/187 (36.90%), Postives = 97/187 (51.87%), Query Frame = 3
Query:  207 REKMENLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK-RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            ++ + NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL +G     +  +   +   +D + V + I    +   G    IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I + I+ ++ +YI+K   I L + P
Sbjct:   33 KDSVNNLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLNQGEEWKGKVTYDDIEVELSDPSEVEEAINTGQNHIAGVGLGISDKLISLDVSSPHVPDLTLIDLPGITRVAVGNQPSDIGRQIKRLITNYIQKQETINLVVVP 216          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX2_CANFA (Interferon-induced GTP-binding protein Mx2 OS=Canis familiaris GN=MX2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.229e-18
Identity = 64/154 (41.56%), Postives = 84/154 (54.55%), Query Frame = 3
Query:  312 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQL----HKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            +LPAIA            LE++ G   LPRGSGIVTR PLVL+L    HK   G   Y +       +F D + V KEI+   +   G+   IS   I L I SP V +LTLIDLPG+T+VAV  QP  I   I+ ++++YI+K   I L + P
Sbjct:  117 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKRDPHKAWRGRISYRK----TELQFQDPSQVEKEIRQAQNIIAGQGLGISHELISLEITSPEVPDLTLIDLPGITRVAVGNQPQDIGVQIKALIKNYIQKQETINLVVVP 265          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX1_MOUSE (Interferon-induced GTP-binding protein Mx1 OS=Mus musculus GN=Mx1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.229e-18
Identity = 61/151 (40.40%), Postives = 85/151 (56.29%), Query Frame = 3
Query:  312 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK-RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL+EG     +  +   +   +D + V + I    +   G    IS   I L + SPNV +LTLIDLPG+T+VAV  QP  I + I+ ++++YI+K   I L + P
Sbjct:   35 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLRKLKEGEEWRGKVSYDDIEVELSDPSEVEEAINKGQNFIAGVGLGISDKLISLDVSSPNVPDLTLIDLPGITRVAVGNQPADIGRQIKRLIKTYIQKQETINLVVVP 184          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX2_RAT (Interferon-induced GTP-binding protein Mx2 OS=Rattus norvegicus GN=Mx2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.075e-17
Identity = 69/187 (36.90%), Postives = 97/187 (51.87%), Query Frame = 3
Query:  207 REKMENLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRK-RFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            ++ + NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL +G     +  +   +   +D + V + I    +   G    IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I + I+ ++ +YI+K   I L + P
Sbjct:   33 KDSLNNLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLNQGEEWKGKVTYDDIEVELSDPSEVEEAINTGQNHIAGVGLGISDKLISLDVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQIKRLITNYIQKQETINLVVVP 216          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MSP1_SCHPO (Protein msp1, mitochondrial OS=Schizosaccharomyces pombe GN=msp1 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.404e-17
Identity = 52/148 (35.14%), Postives = 82/148 (55.41%), Query Frame = 3
Query:  312 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAI 755
            +LP+I             LE+IVG +FLP+GS +VTRRP+ L L    + +  Y EF  +   + TDF+ + + I  + +     ++ +   PI L+IY+ ++ NL+LIDLPG  ++  E QP  +   I  +   YI +PN IILA+
Sbjct:  262 TLPSIVVIGSQSSGKSSVLEAIVGHEFLPKGSNMVTRRPIELTLVHSADTAIPYGEFSGVQLGKITDFSKI-QHILTDLNMAVPSSQGVDDNPIRLTIYASHIPNLSLIDLPGYIQIHSEDQPADLDMKISKLCEKYIREPN-IILAV 407          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX_LARCR (Interferon-induced GTP-binding protein Mx OS=Larimichthys crocea GN=mx PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.394e-17
Identity = 56/151 (37.09%), Postives = 87/151 (57.62%), Query Frame = 3
Query:  312 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAA-VRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + +EG   Y +  +   +   +  A V K+I++  D+  G   +I+   I L I SP+V +LTLI LPG+ +VAV+ QP++I   I+ +++ +I+K   I L + P
Sbjct:   32 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLELKMKRKKEGEEWYGKISYQDYEEEIEVPADVEKKIREAQDKMAGNGVEIADDLISLEIASPDVPDLTLIALPGIARVAVKKQPENIGDQIKRLIQKFIKKQETINLVVVP 181          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MXA_DANRE (Interferon-induced GTP-binding protein MxA OS=Danio rerio GN=mxa PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.127e-17
Identity = 57/151 (37.75%), Postives = 84/151 (55.63%), Query Frame = 3
Query:  312 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIP-RKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            +LPAIA            LE++ G   LPRGSGIVTR PL L++ + ++  R +    +    + F D A V K+I+   D   G    IS   I L I S +V +LTLIDLPG+ +VAV+GQP++I   I+ ++R ++ +   I L + P
Sbjct:   36 ALPAIAVIGDQSSGKSSVLEALSGVP-LPRGSGIVTRCPLELKMIRTKDQDRWHGRISYKTCEEDFDDPAEVEKKIRQAQDEMAGAGVGISEELISLQITSADVPDLTLIDLPGIARVAVKGQPENIGDQIKRLIRKFVTRQETINLVVVP 185          
The following BLAST results are available for this feature:
BLAST of CX070278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
MXB_DANRE1.658e-1839.74Interferon-induced GTP-binding protein MxB OS=Dani... [more]
MX1_BOVIN4.824e-1838.38Interferon-induced GTP-binding protein Mx1 OS=Bos ... [more]
MX_EPICO6.300e-1838.41Interferon-induced GTP-binding protein Mx OS=Epine... [more]
MX3_RAT8.229e-1836.90Interferon-induced GTP-binding protein Mx3 OS=Ratt... [more]
MX2_CANFA8.229e-1841.56Interferon-induced GTP-binding protein Mx2 OS=Cani... [more]
MX1_MOUSE8.229e-1840.40Interferon-induced GTP-binding protein Mx1 OS=Mus ... [more]
MX2_RAT1.075e-1736.90Interferon-induced GTP-binding protein Mx2 OS=Ratt... [more]
MSP1_SCHPO1.404e-1735.14Protein msp1, mitochondrial OS=Schizosaccharomyces... [more]
MX_LARCR2.394e-1737.09Interferon-induced GTP-binding protein Mx OS=Larim... [more]
MXA_DANRE3.127e-1737.75Interferon-induced GTP-binding protein MxA OS=Dani... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15H01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15H01-P1-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070278 ID=CX070278; Name=CX070278; organism=Citrus sinensis; type=EST; length=761bp
CCTCCCCACTTTCTTTTAAATTTCAAACTCTCTCTCTCTCTCTCTCTCTC
TCTCGTTTGTCCTACCGGCGAAGCAAAAACTAATCACACAGATCTCCTCT
GAACGTCGCCGTTTCCAGCATCAGTTGTCAGATCCAGCTGATCTGAATCT
GACAGCTGAGATCATCTACGTTGCCGCCGCCGTCTCCCGAGATATCTACT
TAGCTGCGAGAGAAAATGGAGAACTTGATTTCTTTGGTTAACAAAATACA
AAGAGCTTGTACGGCTCTTGGCGACCACGGTGAAGCCAGCGCATTGCCTA
CTCTTTGGGACTCTCTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCT
GGAAAGTCATCAGTGTTGGAGAGTATTGTTGGCAAGGACTTTTTACCGCG
TGGATCTGGTATCGTTACACGGCGTCCTCTGGTGTTGCAGCTTCATAAAC
TCGAAGAAGGCAGCAGAGAATATGCAGAGTTTCTTCACATTCCAAGGAAA
AGATTTACCGATTTTGCTGCTGTGAGGAAAGAGATTCAAGATGAGACTGA
TAGAGAGACTGGTCGTACCAAACAAATCTCGAGTGTACCAATTCATCTCA
GCATATATTCCCCTAATGTTGTCAACTTAACGCTGATTGATCTTCCTGGG
CTCACAAAAGTAGCAGTTGAGGGTCAACCAGACAGTATTGTGCAAGATAT
TGAGAATATGGTTCGCTCCTACATTGAGAAGCCCAACTGTATAATTCTTG
CAATTTCACCT
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