CX070278

Overview
NameCX070278
Unique NameCX070278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX2_SHEEP (Interferon-induced GTP-binding protein Mx2 OS=Ovis aries GN=MX2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.552e-16
Identity = 62/156 (39.74%), Postives = 85/156 (54.49%), Query Frame = 3
Query:  312 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLE---EGS---REYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            +LPAIA            LE++ G   LPRGSGI+TR PLVL+L K E    G    R   + LH P +       V +EI+   +   G    IS   I+L + SP V +LTLIDLPG+T+VAVE QP  I   I+ ++++YI++   I L + P
Sbjct:  117 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIITRCPLVLKLTKRECEWTGKITYRNVTQQLHNPSE-------VEREIRRAQNIIAGNGVGISHELINLEVTSPEVPDLTLIDLPGITRVAVENQPQDIGLQIKALIKTYIQRQETINLVVVP 264          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX1_PHOVI (Interferon-induced GTP-binding protein Mx1 OS=Phoca vitulina GN=MX1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.552e-16
Identity = 70/199 (35.18%), Postives = 97/199 (48.74%), Query Frame = 3
Query:  180 PSPEIST*LREKMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            P   + +   EK+   I L++ ++    ALG   + +        LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL       G   Y +F        +D + V  EI    +   G  + IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I +  + ++R YI K   I L + P
Sbjct:   35 PENSLCSQYEEKVRPCIDLIDSLR----ALGVEQDLA--------LPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLLNEDEWRGKVSYQDF----EMEISDPSEVEVEISKAQNVIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQTKQLIRKYILKQETINLVVVP 216          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX1_MACMU (Interferon-induced GTP-binding protein Mx1 OS=Macaca mulatta GN=MX1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.552e-16
Identity = 72/186 (38.71%), Postives = 91/186 (48.92%), Query Frame = 3
Query:  222 NLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL       G   Y ++         D + V KEI    +   G    IS   I L I S +V +LTLIDLPG+T+VAV  QP  I   I+ ++R YI++   I L + P
Sbjct:   40 NLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDEWRGKVSYQDY----EIEILDASEVEKEINKAQNTIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPPDIGYKIKTLIRKYIQRQETINLVVVP 218          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX1_CANFA (Interferon-induced GTP-binding protein Mx1 OS=Canis familiaris GN=MX1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.552e-16
Identity = 62/152 (40.79%), Postives = 82/152 (53.95%), Query Frame = 3
Query:  312 SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKL--EEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL  E+  R    +     +  +D + V  EI    D   G  + IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I +  + ++R YI K   I L + P
Sbjct:   65 ALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLINEDEWRGKVSYQDTEME-ISDPSEVEVEINKAQDAIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGRQTKQLIRKYILKQETINLVVVP 214          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX2_HUMAN (Interferon-induced GTP-binding protein Mx2 OS=Homo sapiens GN=MX2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.027e-16
Identity = 71/197 (36.04%), Postives = 91/197 (46.19%), Query Frame = 3
Query:  174 PPPSPEIST*LREKMENLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            PPP             NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L K    +               D   V KEI    +   G  + IS   I L I SP V +LT+IDLPG+T+VAV+ QP  I   I+ +++ YI++   I L + P
Sbjct:   72 PPPGNRSQPRAMGPENNLYSQYEQKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKQPCEAWAGRISYRNTELELQDPGQVEKEIHKAQNVMAGNGRGISHELISLEITSPEVPDLTIIDLPGITRVAVDNQPRDIGLQIKALIKKYIQRQQTINLVVVP 265          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX1_PONAB (Interferon-induced GTP-binding protein Mx1 OS=Pongo abelii GN=MX1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.027e-16
Identity = 71/186 (38.17%), Postives = 92/186 (49.46%), Query Frame = 3
Query:  222 NLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL       G   Y ++        +D + V KEI    +   G    IS   I L I S +V +LTLIDLPG+T+VAV  QP  I   I+ +++ YI++   I L + P
Sbjct:   40 NLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDY----EIEISDASEVEKEINKAQNTIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVP 218          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX1_PIG (Interferon-induced GTP-binding protein Mx1 OS=Sus scrofa GN=MX1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.027e-16
Identity = 71/183 (38.80%), Postives = 91/183 (49.73%), Query Frame = 3
Query:  222 NLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKL--EEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL  EE   +            +D + V KE+        G    IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I   I+++++ YI K   I L + P
Sbjct:   40 NLYSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEEDEWKGKVSYRDSEIELSDASQVEKEVSAAQIAIAGEGVGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPYDIEYQIKSLIKKYICKQETINLVVVP 219          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX1_HUMAN (Interferon-induced GTP-binding protein Mx1 OS=Homo sapiens GN=MX1 PE=1 SV=4)

HSP 1 Score: 86.2705 bits (212), Expect = 2.027e-16
Identity = 71/186 (38.17%), Postives = 92/186 (49.46%), Query Frame = 3
Query:  222 NLISLVNKIQRACTALGDHGEASALPTLWD-SLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            NL S   +  R C  L D     AL    D +LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL       G   Y ++        +D + V KEI    +   G    IS   I L I S +V +LTLIDLPG+T+VAV  QP  I   I+ +++ YI++   I L + P
Sbjct:   40 NLCSQYEEKVRPCIDLID--SLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDY----EIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVP 218          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX1_OTABY (Interferon-induced GTP-binding protein Mx1 OS=Otaria byronia GN=MX1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.647e-16
Identity = 69/199 (34.67%), Postives = 96/199 (48.24%), Query Frame = 3
Query:  180 PSPEIST*LREKMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            P   + +   EK+   I L++ ++    ALG   + +        LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL       G   Y +F        +D + V  EI    +   G  + IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I    + +++ YI K   I L + P
Sbjct:   35 PENSLCSQYEEKVRPCIDLIDSLR----ALGVEQDLA--------LPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLLNKDEWRGKVSYQDF----EMEISDPSEVEVEINKAQNAIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGHQTKKLIKKYILKQETINLVVVP 216          
BLAST of CX070278 vs. ExPASy Swiss-Prot
Match: MX1_EUMJU (Interferon-induced GTP-binding protein Mx1 OS=Eumetopias jubatus GN=MX1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.647e-16
Identity = 69/199 (34.67%), Postives = 96/199 (48.24%), Query Frame = 3
Query:  180 PSPEIST*LREKMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEE-----GSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISP 761
            P   + +   EK+   I L++ ++    ALG   + +        LPAIA            LE++ G   LPRGSGIVTR PLVL+L KL       G   Y +F        +D + V  EI    +   G  + IS   I L + SP+V +LTLIDLPG+T+VAV  QP  I    + +++ YI K   I L + P
Sbjct:   35 PENSLCSQYEEKVRPCIDLIDSLR----ALGVEQDLA--------LPAIAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVLKLKKLLNKDEWRGKVSYQDF----EMEISDPSEVEVEINKAQNAIAGEGQGISHELISLEVSSPHVPDLTLIDLPGITRVAVGNQPADIGHQTKKLIKKYILKQETINLVVVP 216          
The following BLAST results are available for this feature:
BLAST of CX070278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
MX2_SHEEP1.552e-1639.74Interferon-induced GTP-binding protein Mx2 OS=Ovis... [more]
MX1_PHOVI1.552e-1635.18Interferon-induced GTP-binding protein Mx1 OS=Phoc... [more]
MX1_MACMU1.552e-1638.71Interferon-induced GTP-binding protein Mx1 OS=Maca... [more]
MX1_CANFA1.552e-1640.79Interferon-induced GTP-binding protein Mx1 OS=Cani... [more]
MX2_HUMAN2.027e-1636.04Interferon-induced GTP-binding protein Mx2 OS=Homo... [more]
MX1_PONAB2.027e-1638.17Interferon-induced GTP-binding protein Mx1 OS=Pong... [more]
MX1_PIG2.027e-1638.80Interferon-induced GTP-binding protein Mx1 OS=Sus ... [more]
MX1_HUMAN2.027e-1638.17Interferon-induced GTP-binding protein Mx1 OS=Homo... [more]
MX1_OTABY2.647e-1634.67Interferon-induced GTP-binding protein Mx1 OS=Otar... [more]
MX1_EUMJU2.647e-1634.67Interferon-induced GTP-binding protein Mx1 OS=Eume... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_15H01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-15H01-P1-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070278 ID=CX070278; Name=CX070278; organism=Citrus sinensis; type=EST; length=761bp
CCTCCCCACTTTCTTTTAAATTTCAAACTCTCTCTCTCTCTCTCTCTCTC
TCTCGTTTGTCCTACCGGCGAAGCAAAAACTAATCACACAGATCTCCTCT
GAACGTCGCCGTTTCCAGCATCAGTTGTCAGATCCAGCTGATCTGAATCT
GACAGCTGAGATCATCTACGTTGCCGCCGCCGTCTCCCGAGATATCTACT
TAGCTGCGAGAGAAAATGGAGAACTTGATTTCTTTGGTTAACAAAATACA
AAGAGCTTGTACGGCTCTTGGCGACCACGGTGAAGCCAGCGCATTGCCTA
CTCTTTGGGACTCTCTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCT
GGAAAGTCATCAGTGTTGGAGAGTATTGTTGGCAAGGACTTTTTACCGCG
TGGATCTGGTATCGTTACACGGCGTCCTCTGGTGTTGCAGCTTCATAAAC
TCGAAGAAGGCAGCAGAGAATATGCAGAGTTTCTTCACATTCCAAGGAAA
AGATTTACCGATTTTGCTGCTGTGAGGAAAGAGATTCAAGATGAGACTGA
TAGAGAGACTGGTCGTACCAAACAAATCTCGAGTGTACCAATTCATCTCA
GCATATATTCCCCTAATGTTGTCAACTTAACGCTGATTGATCTTCCTGGG
CTCACAAAAGTAGCAGTTGAGGGTCAACCAGACAGTATTGTGCAAGATAT
TGAGAATATGGTTCGCTCCTACATTGAGAAGCCCAACTGTATAATTCTTG
CAATTTCACCT
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